Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3213

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3212 and Shewana3_3213 are separated by 365 nucleotidesShewana3_3213 and Shewana3_3214 are separated by 202 nucleotidesShewana3_3214 and Shewana3_3215 are separated by 22 nucleotides Shewana3_3212: Shewana3_3212 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,855,835 to 3,857,856 _3212 Shewana3_3213: Shewana3_3213 - hypothetical protein (RefSeq), at 3,858,222 to 3,858,635 _3213 Shewana3_3214: Shewana3_3214 - dihydrofolate reductase (RefSeq), at 3,858,838 to 3,859,320 _3214 Shewana3_3215: Shewana3_3215 - hypothetical protein (RefSeq), at 3,859,343 to 3,859,816 _3215 Position (kb) 3858 3859Strain fitness (log2 ratio) -1 0 1 2 3at 3857.308 kb on + strand, within Shewana3_3212at 3857.486 kb on - strand, within Shewana3_3212at 3857.527 kb on + strand, within Shewana3_3212at 3857.591 kb on - strand, within Shewana3_3212at 3858.065 kb on + strandat 3858.281 kb on + strand, within Shewana3_3213at 3858.307 kb on + strand, within Shewana3_3213at 3858.418 kb on - strand, within Shewana3_3213at 3858.821 kb on + strandat 3859.467 kb on - strand, within Shewana3_3215at 3859.570 kb on - strand, within Shewana3_3215

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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3,857,308 + Shewana3_3212 0.73 +1.1
3,857,486 - Shewana3_3212 0.82 +0.7
3,857,527 + Shewana3_3212 0.84 +3.1
3,857,591 - Shewana3_3212 0.87 +0.3
3,858,065 + +1.2
3,858,281 + Shewana3_3213 0.14 +0.6
3,858,307 + Shewana3_3213 0.21 +0.4
3,858,418 - Shewana3_3213 0.47 +1.2
3,858,821 + +0.3
3,859,467 - Shewana3_3215 0.26 +0.7
3,859,570 - Shewana3_3215 0.48 -0.6

Or see this region's nucleotide sequence