Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3057

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3055 and Shewana3_3056 are separated by 1 nucleotidesShewana3_3056 and Shewana3_3057 are separated by 122 nucleotidesShewana3_3057 and Shewana3_3058 are separated by 158 nucleotides Shewana3_3055: Shewana3_3055 - hypothetical protein (RefSeq), at 3,662,487 to 3,663,113 _3055 Shewana3_3056: Shewana3_3056 - hypothetical protein (RefSeq), at 3,663,115 to 3,663,606 _3056 Shewana3_3057: Shewana3_3057 - hypothetical protein (RefSeq), at 3,663,729 to 3,664,157 _3057 Shewana3_3058: Shewana3_3058 - tyrosyl-tRNA synthetase (RefSeq), at 3,664,316 to 3,665,512 _3058 Position (kb) 3663 3664 3665Strain fitness (log2 ratio) -2 -1 0 1at 3662.770 kb on - strand, within Shewana3_3055at 3662.872 kb on - strand, within Shewana3_3055at 3662.889 kb on + strand, within Shewana3_3055at 3662.922 kb on + strand, within Shewana3_3055at 3663.140 kb on + strandat 3663.188 kb on - strand, within Shewana3_3056at 3663.254 kb on + strand, within Shewana3_3056at 3663.444 kb on + strand, within Shewana3_3056at 3663.500 kb on + strand, within Shewana3_3056at 3663.515 kb on + strand, within Shewana3_3056at 3663.589 kb on - strandat 3663.769 kb on + strandat 3663.931 kb on + strand, within Shewana3_3057at 3664.052 kb on - strand, within Shewana3_3057at 3664.303 kb on + strandat 3664.314 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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3,662,770 - Shewana3_3055 0.45 +0.3
3,662,872 - Shewana3_3055 0.61 -0.2
3,662,889 + Shewana3_3055 0.64 +1.1
3,662,922 + Shewana3_3055 0.69 -1.5
3,663,140 + +0.3
3,663,188 - Shewana3_3056 0.15 -1.2
3,663,254 + Shewana3_3056 0.28 -1.7
3,663,444 + Shewana3_3056 0.67 +0.1
3,663,500 + Shewana3_3056 0.78 +0.3
3,663,515 + Shewana3_3056 0.81 +0.4
3,663,589 - +0.7
3,663,769 + -0.3
3,663,931 + Shewana3_3057 0.47 +0.0
3,664,052 - Shewana3_3057 0.75 +1.6
3,664,303 + -2.0
3,664,314 + -0.0

Or see this region's nucleotide sequence