Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2105 and Shewana3_2106 are separated by 108 nucleotides Shewana3_2106 and Shewana3_2107 are separated by 223 nucleotides
Shewana3_2105: Shewana3_2105 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 2,529,187 to 2,530,764
_2105
Shewana3_2106: Shewana3_2106 - hypothetical protein (RefSeq), at 2,530,873 to 2,531,358
_2106
Shewana3_2107: Shewana3_2107 - cytochrome c oxidase, cbb3-type, subunit I (RefSeq), at 2,531,582 to 2,533,018
_2107
Position (kb)
2530
2531
2532 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2530.172 kb on + strand, within Shewana3_2105 at 2530.222 kb on - strand, within Shewana3_2105 at 2530.325 kb on - strand, within Shewana3_2105 at 2531.099 kb on - strand, within Shewana3_2106 at 2531.522 kb on + strand at 2531.522 kb on + strand at 2531.612 kb on + strand at 2531.717 kb on + strand at 2531.717 kb on + strand at 2531.725 kb on - strand at 2532.124 kb on + strand, within Shewana3_2107 at 2532.124 kb on + strand, within Shewana3_2107 at 2532.215 kb on + strand, within Shewana3_2107 at 2532.266 kb on + strand, within Shewana3_2107
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 2,530,172 + Shewana3_2105 0.62 -0.1 2,530,222 - Shewana3_2105 0.66 -0.7 2,530,325 - Shewana3_2105 0.72 -2.2 2,531,099 - Shewana3_2106 0.47 -3.1 2,531,522 + -3.3 2,531,522 + -3.6 2,531,612 + -3.0 2,531,717 + -4.6 2,531,717 + -5.0 2,531,725 - -1.3 2,532,124 + Shewana3_2107 0.38 -2.7 2,532,124 + Shewana3_2107 0.38 -1.8 2,532,215 + Shewana3_2107 0.44 -4.0 2,532,266 + Shewana3_2107 0.48 -4.1
Or see this region's nucleotide sequence