Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1760

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1759 and metG are separated by 384 nucleotidesmetG and Shewana3_1761 are separated by 160 nucleotides Shewana3_1759: Shewana3_1759 - hypothetical protein (RefSeq), at 2,072,546 to 2,073,502 _1759 Shewana3_1760: metG - methionyl-tRNA synthetase (RefSeq), at 2,073,887 to 2,075,917 metG Shewana3_1761: Shewana3_1761 - ATP-binding Mrp/Nbp35 family protein (RefSeq), at 2,076,078 to 2,077,193 _1761 Position (kb) 2073 2074 2075 2076Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2072.894 kb on + strand, within Shewana3_1759at 2073.036 kb on - strand, within Shewana3_1759at 2073.172 kb on + strand, within Shewana3_1759at 2073.328 kb on - strand, within Shewana3_1759at 2073.427 kb on + strandat 2073.440 kb on + strandat 2073.661 kb on + strandat 2073.721 kb on + strandat 2074.195 kb on + strand, within metGat 2076.174 kb on + strandat 2076.184 kb on + strandat 2076.215 kb on + strand, within Shewana3_1761at 2076.239 kb on + strand, within Shewana3_1761at 2076.244 kb on + strand, within Shewana3_1761at 2076.372 kb on + strand, within Shewana3_1761at 2076.459 kb on + strand, within Shewana3_1761at 2076.565 kb on - strand, within Shewana3_1761at 2076.580 kb on + strand, within Shewana3_1761at 2076.670 kb on + strand, within Shewana3_1761at 2076.837 kb on + strand, within Shewana3_1761

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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2,072,894 + Shewana3_1759 0.36 -0.2
2,073,036 - Shewana3_1759 0.51 +0.8
2,073,172 + Shewana3_1759 0.65 +1.1
2,073,328 - Shewana3_1759 0.82 +0.1
2,073,427 + +0.2
2,073,440 + -1.9
2,073,661 + +3.8
2,073,721 + -1.7
2,074,195 + metG Shewana3_1760 0.15 +1.7
2,076,174 + -0.9
2,076,184 + -2.3
2,076,215 + Shewana3_1761 0.12 -0.6
2,076,239 + Shewana3_1761 0.14 -1.7
2,076,244 + Shewana3_1761 0.15 -0.9
2,076,372 + Shewana3_1761 0.26 -1.5
2,076,459 + Shewana3_1761 0.34 -1.6
2,076,565 - Shewana3_1761 0.44 -1.5
2,076,580 + Shewana3_1761 0.45 -0.8
2,076,670 + Shewana3_1761 0.53 -0.0
2,076,837 + Shewana3_1761 0.68 -0.2

Or see this region's nucleotide sequence