Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1568

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1567 and Shewana3_1568 are separated by 26 nucleotidesShewana3_1568 and Shewana3_1569 are separated by 92 nucleotides Shewana3_1567: Shewana3_1567 - chromosome segregation protein SMC (RefSeq), at 1,831,199 to 1,834,627 _1567 Shewana3_1568: Shewana3_1568 - cell division protein ZipA (RefSeq), at 1,834,654 to 1,835,694 _1568 Shewana3_1569: Shewana3_1569 - DNA ligase, NAD-dependent (RefSeq), at 1,835,787 to 1,837,862 _1569 Position (kb) 1834 1835 1836Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1833.672 kb on + strand, within Shewana3_1567at 1833.680 kb on - strand, within Shewana3_1567at 1833.750 kb on - strand, within Shewana3_1567at 1833.775 kb on + strand, within Shewana3_1567at 1833.935 kb on + strand, within Shewana3_1567at 1834.026 kb on + strand, within Shewana3_1567at 1834.312 kb on - strandat 1834.485 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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1,833,672 + Shewana3_1567 0.72 +0.1
1,833,680 - Shewana3_1567 0.72 -1.6
1,833,750 - Shewana3_1567 0.74 -3.5
1,833,775 + Shewana3_1567 0.75 +0.5
1,833,935 + Shewana3_1567 0.80 +1.8
1,834,026 + Shewana3_1567 0.82 +0.2
1,834,312 - -1.7
1,834,485 + +0.9

Or see this region's nucleotide sequence