Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1057

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1056 and Shewana3_1057 are separated by 26 nucleotidesShewana3_1057 and Shewana3_1058 are separated by 516 nucleotides Shewana3_1056: Shewana3_1056 - trimethylamine-N-oxide reductase c-type cytochrome TorC (RefSeq), at 1,238,687 to 1,239,865 _1056 Shewana3_1057: Shewana3_1057 - periplasmic nitrate reductase NapE (RefSeq), at 1,239,892 to 1,240,062 _1057 Shewana3_1058: Shewana3_1058 - xanthine/uracil/vitamin C permease (RefSeq), at 1,240,579 to 1,241,931 _1058 Position (kb) 1239 1240 1241Strain fitness (log2 ratio) -2 -1 0 1at 1239.242 kb on + strand, within Shewana3_1056at 1239.714 kb on - strand, within Shewana3_1056at 1239.734 kb on - strand, within Shewana3_1056at 1240.453 kb on + strandat 1240.583 kb on - strandat 1240.743 kb on - strand, within Shewana3_1058at 1240.796 kb on + strand, within Shewana3_1058at 1240.815 kb on - strand, within Shewana3_1058at 1240.817 kb on - strand, within Shewana3_1058at 1240.896 kb on - strand, within Shewana3_1058

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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1,239,242 + Shewana3_1056 0.47 +0.7
1,239,714 - Shewana3_1056 0.87 +0.8
1,239,734 - Shewana3_1056 0.89 -0.6
1,240,453 + -0.8
1,240,583 - -2.4
1,240,743 - Shewana3_1058 0.12 +1.6
1,240,796 + Shewana3_1058 0.16 -0.4
1,240,815 - Shewana3_1058 0.17 +0.8
1,240,817 - Shewana3_1058 0.18 +0.7
1,240,896 - Shewana3_1058 0.23 -0.6

Or see this region's nucleotide sequence