Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0739 and Shewana3_R0028 are separated by 152 nucleotides Shewana3_R0028 and Shewana3_0740 are separated by 141 nucleotides Shewana3_0740 and modC are separated by 241 nucleotides modC and modB overlap by 7 nucleotides modB and Shewana3_0743 overlap by 1 nucleotides
Shewana3_0739: Shewana3_0739 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 858,135 to 859,724
_0739
Shewana3_R0028: Shewana3_R0028 - tRNA-Leu (RefSeq), at 859,877 to 859,963
_R0028
Shewana3_0740: Shewana3_0740 - hypothetical protein (RefSeq), at 860,105 to 860,437
_0740
Shewana3_0741: modC - molybdate transporter ATP-binding protein (RefSeq), at 860,679 to 861,764
modC
Shewana3_0742: modB - molybdate ABC transporter permease protein (RefSeq), at 861,758 to 862,495
modB
Shewana3_0743: Shewana3_0743 - molybdenum ABC transporter, periplasmic molybdate-binding protein (RefSeq), at 862,495 to 863,280
_0743
Position (kb) 860
861
862 Strain fitness (log2 ratio) -2
-1
0
1
2 at 859.705 kb on - strand at 860.039 kb on + strand at 860.188 kb on + strand, within Shewana3_0740 at 860.302 kb on - strand, within Shewana3_0740 at 860.327 kb on + strand, within Shewana3_0740 at 860.335 kb on - strand, within Shewana3_0740 at 860.336 kb on - strand, within Shewana3_0740 at 860.433 kb on + strand at 860.479 kb on - strand at 860.779 kb on + strand at 861.256 kb on + strand, within modC at 861.305 kb on - strand, within modC at 861.305 kb on - strand, within modC at 861.331 kb on + strand, within modC at 861.375 kb on + strand, within modC at 861.399 kb on + strand, within modC at 861.720 kb on + strand at 861.728 kb on - strand at 861.728 kb on - strand at 861.821 kb on + strand at 861.994 kb on - strand, within modB at 862.165 kb on + strand, within modB at 862.173 kb on - strand, within modB at 862.248 kb on - strand, within modB at 862.256 kb on - strand, within modB at 862.314 kb on + strand, within modB at 862.318 kb on - strand, within modB at 862.500 kb on - strand at 862.554 kb on - strand at 862.734 kb on - strand, within Shewana3_0743
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 859,705 - -0.2 860,039 + -0.8 860,188 + Shewana3_0740 0.25 -0.3 860,302 - Shewana3_0740 0.59 -0.0 860,327 + Shewana3_0740 0.67 +1.2 860,335 - Shewana3_0740 0.69 +0.8 860,336 - Shewana3_0740 0.69 +0.1 860,433 + +1.1 860,479 - -0.2 860,779 + +0.5 861,256 + modC Shewana3_0741 0.53 -0.1 861,305 - modC Shewana3_0741 0.58 +0.9 861,305 - modC Shewana3_0741 0.58 -0.1 861,331 + modC Shewana3_0741 0.60 -0.9 861,375 + modC Shewana3_0741 0.64 -0.8 861,399 + modC Shewana3_0741 0.66 +2.5 861,720 + -1.8 861,728 - +1.9 861,728 - -0.2 861,821 + -1.0 861,994 - modB Shewana3_0742 0.32 +0.2 862,165 + modB Shewana3_0742 0.55 -1.7 862,173 - modB Shewana3_0742 0.56 -1.8 862,248 - modB Shewana3_0742 0.66 +0.2 862,256 - modB Shewana3_0742 0.67 +1.3 862,314 + modB Shewana3_0742 0.75 +0.1 862,318 - modB Shewana3_0742 0.76 -0.4 862,500 - +0.2 862,554 - +0.3 862,734 - Shewana3_0743 0.30 +0.7
Or see this region's nucleotide sequence