Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0649 and Shewana3_0650 are separated by 352 nucleotides Shewana3_0650 and Shewana3_0651 are separated by 586 nucleotides
Shewana3_0649: Shewana3_0649 - dipeptidyl-peptidase IV (RefSeq), at 766,577 to 768,868
_0649
Shewana3_0650: Shewana3_0650 - two-component response regulator (RefSeq), at 769,221 to 769,937
_0650
Shewana3_0651: Shewana3_0651 - hypothetical protein (RefSeq), at 770,524 to 770,958
_0651
Position (kb) 769
770 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 768.261 kb on + strand, within Shewana3_0649 at 768.274 kb on - strand, within Shewana3_0649 at 768.387 kb on + strand, within Shewana3_0649 at 768.683 kb on + strand at 768.729 kb on - strand at 768.829 kb on + strand at 768.883 kb on + strand at 768.920 kb on + strand at 768.922 kb on + strand at 768.945 kb on - strand at 768.966 kb on + strand at 768.973 kb on + strand at 769.016 kb on - strand at 769.084 kb on + strand at 769.258 kb on - strand at 769.433 kb on - strand, within Shewana3_0650 at 769.433 kb on - strand, within Shewana3_0650 at 769.487 kb on - strand, within Shewana3_0650 at 769.538 kb on - strand, within Shewana3_0650 at 769.580 kb on - strand, within Shewana3_0650 at 769.589 kb on - strand, within Shewana3_0650 at 769.821 kb on - strand, within Shewana3_0650 at 769.821 kb on - strand, within Shewana3_0650 at 769.821 kb on - strand, within Shewana3_0650 at 769.842 kb on - strand, within Shewana3_0650 at 769.842 kb on - strand, within Shewana3_0650 at 770.232 kb on - strand at 770.267 kb on + strand at 770.349 kb on + strand at 770.397 kb on + strand at 770.496 kb on - strand at 770.636 kb on + strand, within Shewana3_0651 at 770.646 kb on + strand, within Shewana3_0651 at 770.897 kb on + strand, within Shewana3_0651 at 770.897 kb on + strand, within Shewana3_0651 at 770.917 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 768,261 + Shewana3_0649 0.73 +0.0 768,274 - Shewana3_0649 0.74 -1.3 768,387 + Shewana3_0649 0.79 -0.2 768,683 + +0.1 768,729 - -1.0 768,829 + -3.7 768,883 + +0.1 768,920 + +0.4 768,922 + -0.0 768,945 - -1.3 768,966 + -1.0 768,973 + +1.0 769,016 - +0.4 769,084 + +0.6 769,258 - +2.1 769,433 - Shewana3_0650 0.30 -0.7 769,433 - Shewana3_0650 0.30 +1.2 769,487 - Shewana3_0650 0.37 -1.1 769,538 - Shewana3_0650 0.44 +2.3 769,580 - Shewana3_0650 0.50 +2.6 769,589 - Shewana3_0650 0.51 +2.6 769,821 - Shewana3_0650 0.84 +4.1 769,821 - Shewana3_0650 0.84 +4.8 769,821 - Shewana3_0650 0.84 -0.4 769,842 - Shewana3_0650 0.87 +0.2 769,842 - Shewana3_0650 0.87 +3.2 770,232 - -1.5 770,267 + -0.9 770,349 + -2.9 770,397 + +0.2 770,496 - +1.6 770,636 + Shewana3_0651 0.26 +0.9 770,646 + Shewana3_0651 0.28 +0.5 770,897 + Shewana3_0651 0.86 +0.6 770,897 + Shewana3_0651 0.86 +0.3 770,917 + -0.2
Or see this region's nucleotide sequence