Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0526 and Shewana3_0527 are separated by 250 nucleotides Shewana3_0527 and Shewana3_0528 are separated by 60 nucleotides
Shewana3_0526: Shewana3_0526 - sigma-54 dependent trancsriptional regulator (RefSeq), at 616,916 to 618,280
_0526
Shewana3_0527: Shewana3_0527 - hypothetical protein (RefSeq), at 618,531 to 620,195
_0527
Shewana3_0528: Shewana3_0528 - peptidase M11, gametolysin (RefSeq), at 620,256 to 622,217
_0528
Position (kb) 618
619
620
621 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 617.553 kb on + strand, within Shewana3_0526 at 617.553 kb on + strand, within Shewana3_0526 at 617.566 kb on - strand, within Shewana3_0526 at 617.631 kb on + strand, within Shewana3_0526 at 617.946 kb on + strand, within Shewana3_0526 at 617.954 kb on - strand, within Shewana3_0526 at 618.105 kb on + strand, within Shewana3_0526 at 618.120 kb on + strand, within Shewana3_0526 at 618.144 kb on - strand at 618.154 kb on - strand at 618.154 kb on - strand at 618.223 kb on + strand at 618.264 kb on + strand at 618.272 kb on - strand at 618.273 kb on - strand at 618.274 kb on + strand at 618.274 kb on + strand at 618.282 kb on - strand at 618.295 kb on - strand at 618.325 kb on + strand at 618.429 kb on - strand at 618.439 kb on - strand at 618.526 kb on - strand at 618.548 kb on + strand at 618.548 kb on + strand at 618.565 kb on - strand at 618.565 kb on - strand at 618.601 kb on - strand at 618.627 kb on + strand at 618.720 kb on - strand, within Shewana3_0527 at 618.720 kb on - strand, within Shewana3_0527 at 618.760 kb on + strand, within Shewana3_0527 at 619.227 kb on - strand, within Shewana3_0527 at 619.370 kb on + strand, within Shewana3_0527 at 619.378 kb on - strand, within Shewana3_0527 at 619.422 kb on + strand, within Shewana3_0527 at 619.444 kb on - strand, within Shewana3_0527 at 619.539 kb on + strand, within Shewana3_0527 at 619.545 kb on + strand, within Shewana3_0527 at 619.601 kb on - strand, within Shewana3_0527 at 619.606 kb on - strand, within Shewana3_0527 at 619.606 kb on - strand, within Shewana3_0527 at 619.608 kb on + strand, within Shewana3_0527 at 619.670 kb on - strand, within Shewana3_0527 at 619.687 kb on - strand, within Shewana3_0527 at 619.691 kb on + strand, within Shewana3_0527 at 619.697 kb on + strand, within Shewana3_0527 at 619.699 kb on - strand, within Shewana3_0527 at 619.699 kb on - strand, within Shewana3_0527 at 619.699 kb on - strand, within Shewana3_0527 at 619.734 kb on - strand, within Shewana3_0527 at 619.734 kb on - strand, within Shewana3_0527 at 619.772 kb on + strand, within Shewana3_0527 at 619.836 kb on + strand, within Shewana3_0527 at 619.913 kb on - strand, within Shewana3_0527 at 619.938 kb on + strand, within Shewana3_0527 at 619.938 kb on + strand, within Shewana3_0527 at 620.086 kb on - strand at 620.147 kb on + strand at 620.270 kb on - strand at 620.336 kb on - strand at 620.364 kb on + strand at 620.523 kb on + strand, within Shewana3_0528 at 620.523 kb on + strand, within Shewana3_0528 at 620.531 kb on - strand, within Shewana3_0528 at 620.581 kb on + strand, within Shewana3_0528 at 620.815 kb on + strand, within Shewana3_0528 at 621.120 kb on + strand, within Shewana3_0528 at 621.137 kb on - strand, within Shewana3_0528
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 617,553 + Shewana3_0526 0.47 -0.2 617,553 + Shewana3_0526 0.47 +0.7 617,566 - Shewana3_0526 0.48 -0.1 617,631 + Shewana3_0526 0.52 +1.4 617,946 + Shewana3_0526 0.75 +0.1 617,954 - Shewana3_0526 0.76 -0.0 618,105 + Shewana3_0526 0.87 +0.2 618,120 + Shewana3_0526 0.88 +0.2 618,144 - +1.5 618,154 - -3.9 618,154 - -2.7 618,223 + +0.4 618,264 + -0.7 618,272 - +3.6 618,273 - +0.1 618,274 + +3.5 618,274 + -1.2 618,282 - -0.6 618,295 - +0.6 618,325 + -0.8 618,429 - +1.2 618,439 - -0.1 618,526 - -0.4 618,548 + -1.3 618,548 + +0.1 618,565 - +0.0 618,565 - +0.1 618,601 - -0.8 618,627 + -0.1 618,720 - Shewana3_0527 0.11 -0.0 618,720 - Shewana3_0527 0.11 +0.4 618,760 + Shewana3_0527 0.14 -2.4 619,227 - Shewana3_0527 0.42 -0.4 619,370 + Shewana3_0527 0.50 -1.3 619,378 - Shewana3_0527 0.51 -1.2 619,422 + Shewana3_0527 0.54 +0.5 619,444 - Shewana3_0527 0.55 +0.3 619,539 + Shewana3_0527 0.61 -0.6 619,545 + Shewana3_0527 0.61 -0.9 619,601 - Shewana3_0527 0.64 +0.4 619,606 - Shewana3_0527 0.65 +0.4 619,606 - Shewana3_0527 0.65 -1.6 619,608 + Shewana3_0527 0.65 -0.9 619,670 - Shewana3_0527 0.68 -0.1 619,687 - Shewana3_0527 0.69 -0.9 619,691 + Shewana3_0527 0.70 +1.2 619,697 + Shewana3_0527 0.70 +2.2 619,699 - Shewana3_0527 0.70 +0.1 619,699 - Shewana3_0527 0.70 -0.0 619,699 - Shewana3_0527 0.70 +0.6 619,734 - Shewana3_0527 0.72 -0.2 619,734 - Shewana3_0527 0.72 -1.4 619,772 + Shewana3_0527 0.75 +0.8 619,836 + Shewana3_0527 0.78 +0.0 619,913 - Shewana3_0527 0.83 +0.2 619,938 + Shewana3_0527 0.85 -0.3 619,938 + Shewana3_0527 0.85 -1.8 620,086 - +0.4 620,147 + +1.3 620,270 - -2.6 620,336 - -0.1 620,364 + -2.7 620,523 + Shewana3_0528 0.14 -0.0 620,523 + Shewana3_0528 0.14 -0.9 620,531 - Shewana3_0528 0.14 -0.7 620,581 + Shewana3_0528 0.17 -2.7 620,815 + Shewana3_0528 0.28 -0.6 621,120 + Shewana3_0528 0.44 +0.5 621,137 - Shewana3_0528 0.45 -0.2
Or see this region's nucleotide sequence