Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0509

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0508 and Shewana3_0509 are separated by 86 nucleotidesShewana3_0509 and Shewana3_0510 are separated by 27 nucleotidesShewana3_0510 and Shewana3_0511 are separated by 33 nucleotides Shewana3_0508: Shewana3_0508 - major facilitator transporter (RefSeq), at 599,727 to 600,944 _0508 Shewana3_0509: Shewana3_0509 - short-chain dehydrogenase/reductase SDR (RefSeq), at 601,031 to 601,708 _0509 Shewana3_0510: Shewana3_0510 - biotin carboxyl carrier protein (RefSeq), at 601,736 to 602,191 _0510 Shewana3_0511: Shewana3_0511 - 3-dehydroquinate dehydratase (RefSeq), at 602,225 to 602,659 _0511 Position (kb) 601 602Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 600.148 kb on - strand, within Shewana3_0508at 600.254 kb on - strand, within Shewana3_0508at 600.423 kb on + strand, within Shewana3_0508at 600.423 kb on + strand, within Shewana3_0508at 600.457 kb on - strand, within Shewana3_0508at 600.526 kb on + strand, within Shewana3_0508at 600.534 kb on - strand, within Shewana3_0508at 600.561 kb on - strand, within Shewana3_0508at 600.595 kb on + strand, within Shewana3_0508at 600.683 kb on + strand, within Shewana3_0508at 600.686 kb on - strand, within Shewana3_0508at 600.693 kb on + strand, within Shewana3_0508at 600.731 kb on + strand, within Shewana3_0508at 600.753 kb on - strand, within Shewana3_0508at 600.759 kb on + strand, within Shewana3_0508at 600.760 kb on + strand, within Shewana3_0508at 600.768 kb on - strand, within Shewana3_0508at 600.784 kb on + strand, within Shewana3_0508at 600.784 kb on + strand, within Shewana3_0508at 600.787 kb on - strand, within Shewana3_0508at 600.792 kb on - strand, within Shewana3_0508at 600.792 kb on - strand, within Shewana3_0508at 600.836 kb on + strandat 600.845 kb on - strandat 600.889 kb on + strandat 601.128 kb on + strand, within Shewana3_0509at 601.193 kb on - strand, within Shewana3_0509at 601.308 kb on + strand, within Shewana3_0509at 601.338 kb on - strand, within Shewana3_0509at 601.426 kb on + strand, within Shewana3_0509at 601.469 kb on + strand, within Shewana3_0509at 601.521 kb on + strand, within Shewana3_0509at 601.686 kb on - strandat 601.878 kb on - strand, within Shewana3_0510at 601.904 kb on + strand, within Shewana3_0510at 601.956 kb on + strand, within Shewana3_0510at 601.964 kb on - strand, within Shewana3_0510at 601.992 kb on + strand, within Shewana3_0510at 602.010 kb on + strand, within Shewana3_0510at 602.023 kb on + strand, within Shewana3_0510at 602.023 kb on + strand, within Shewana3_0510at 602.031 kb on - strand, within Shewana3_0510at 602.031 kb on - strand, within Shewana3_0510at 602.048 kb on - strand, within Shewana3_0510at 602.059 kb on - strand, within Shewana3_0510at 602.270 kb on + strand, within Shewana3_0511at 602.278 kb on - strand, within Shewana3_0511at 602.423 kb on - strand, within Shewana3_0511at 602.434 kb on - strand, within Shewana3_0511at 602.488 kb on + strand, within Shewana3_0511at 602.576 kb on + strand, within Shewana3_0511at 602.584 kb on - strand, within Shewana3_0511

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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600,148 - Shewana3_0508 0.35 +0.9
600,254 - Shewana3_0508 0.43 +0.3
600,423 + Shewana3_0508 0.57 -0.2
600,423 + Shewana3_0508 0.57 +0.0
600,457 - Shewana3_0508 0.60 +1.0
600,526 + Shewana3_0508 0.66 +0.6
600,534 - Shewana3_0508 0.66 +0.3
600,561 - Shewana3_0508 0.68 -2.6
600,595 + Shewana3_0508 0.71 -1.4
600,683 + Shewana3_0508 0.78 -0.5
600,686 - Shewana3_0508 0.79 +1.4
600,693 + Shewana3_0508 0.79 -0.5
600,731 + Shewana3_0508 0.82 -1.0
600,753 - Shewana3_0508 0.84 +1.1
600,759 + Shewana3_0508 0.85 +1.1
600,760 + Shewana3_0508 0.85 -1.8
600,768 - Shewana3_0508 0.85 -0.7
600,784 + Shewana3_0508 0.87 +0.8
600,784 + Shewana3_0508 0.87 -1.0
600,787 - Shewana3_0508 0.87 -1.9
600,792 - Shewana3_0508 0.87 -0.3
600,792 - Shewana3_0508 0.87 +0.7
600,836 + +0.5
600,845 - +0.8
600,889 + -0.7
601,128 + Shewana3_0509 0.14 +0.3
601,193 - Shewana3_0509 0.24 +0.5
601,308 + Shewana3_0509 0.41 +0.8
601,338 - Shewana3_0509 0.45 +2.5
601,426 + Shewana3_0509 0.58 +1.4
601,469 + Shewana3_0509 0.65 -0.9
601,521 + Shewana3_0509 0.72 +0.7
601,686 - -1.3
601,878 - Shewana3_0510 0.31 -1.2
601,904 + Shewana3_0510 0.37 +0.5
601,956 + Shewana3_0510 0.48 -0.1
601,964 - Shewana3_0510 0.50 -0.5
601,992 + Shewana3_0510 0.56 -1.3
602,010 + Shewana3_0510 0.60 +0.4
602,023 + Shewana3_0510 0.63 -0.3
602,023 + Shewana3_0510 0.63 +0.3
602,031 - Shewana3_0510 0.65 +0.9
602,031 - Shewana3_0510 0.65 +0.1
602,048 - Shewana3_0510 0.68 +1.7
602,059 - Shewana3_0510 0.71 -4.6
602,270 + Shewana3_0511 0.10 -2.2
602,278 - Shewana3_0511 0.12 -2.0
602,423 - Shewana3_0511 0.46 -4.7
602,434 - Shewana3_0511 0.48 -3.8
602,488 + Shewana3_0511 0.60 -2.8
602,576 + Shewana3_0511 0.81 -4.9
602,584 - Shewana3_0511 0.83 -3.8

Or see this region's nucleotide sequence