Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0494 and Shewana3_0495 are separated by 119 nucleotides Shewana3_0495 and Shewana3_0496 are separated by 9 nucleotides Shewana3_0496 and Shewana3_0497 overlap by 4 nucleotides
Shewana3_0494: Shewana3_0494 - polysulphide reductase, NrfD (RefSeq), at 576,932 to 577,879
_0494
Shewana3_0495: Shewana3_0495 - no description, at 577,999 to 578,470
_0495
Shewana3_0496: Shewana3_0496 - periplasmic copper-binding (RefSeq), at 578,480 to 579,754
_0496
Shewana3_0497: Shewana3_0497 - ABC transporter related (RefSeq), at 579,751 to 580,797
_0497
Position (kb) 578
579
580 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 577.549 kb on - strand, within Shewana3_0494 at 577.559 kb on - strand, within Shewana3_0494 at 577.884 kb on + strand at 578.142 kb on + strand, within Shewana3_0495 at 578.268 kb on + strand, within Shewana3_0495 at 578.350 kb on - strand, within Shewana3_0495 at 578.366 kb on - strand, within Shewana3_0495 at 578.727 kb on + strand, within Shewana3_0496 at 578.881 kb on + strand, within Shewana3_0496 at 578.889 kb on - strand, within Shewana3_0496 at 578.987 kb on + strand, within Shewana3_0496 at 579.168 kb on + strand, within Shewana3_0496 at 579.302 kb on - strand, within Shewana3_0496 at 579.304 kb on + strand, within Shewana3_0496 at 579.498 kb on + strand, within Shewana3_0496 at 579.563 kb on + strand, within Shewana3_0496 at 579.676 kb on - strand at 579.989 kb on - strand, within Shewana3_0497 at 579.994 kb on - strand, within Shewana3_0497 at 580.016 kb on + strand, within Shewana3_0497 at 580.147 kb on - strand, within Shewana3_0497 at 580.183 kb on - strand, within Shewana3_0497 at 580.232 kb on - strand, within Shewana3_0497 at 580.258 kb on + strand, within Shewana3_0497 at 580.268 kb on + strand, within Shewana3_0497 at 580.473 kb on + strand, within Shewana3_0497 at 580.473 kb on + strand, within Shewana3_0497 at 580.481 kb on - strand, within Shewana3_0497 at 580.710 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 577,549 - Shewana3_0494 0.65 -0.2 577,559 - Shewana3_0494 0.66 -1.3 577,884 + +0.3 578,142 + Shewana3_0495 0.30 +3.0 578,268 + Shewana3_0495 0.57 +0.2 578,350 - Shewana3_0495 0.74 +0.1 578,366 - Shewana3_0495 0.78 +2.7 578,727 + Shewana3_0496 0.19 +2.1 578,881 + Shewana3_0496 0.31 +0.3 578,889 - Shewana3_0496 0.32 -1.9 578,987 + Shewana3_0496 0.40 +2.1 579,168 + Shewana3_0496 0.54 +2.4 579,302 - Shewana3_0496 0.64 +0.8 579,304 + Shewana3_0496 0.65 +1.2 579,498 + Shewana3_0496 0.80 +0.0 579,563 + Shewana3_0496 0.85 +0.1 579,676 - -2.1 579,989 - Shewana3_0497 0.23 +0.5 579,994 - Shewana3_0497 0.23 -3.8 580,016 + Shewana3_0497 0.25 +0.6 580,147 - Shewana3_0497 0.38 -3.0 580,183 - Shewana3_0497 0.41 +0.3 580,232 - Shewana3_0497 0.46 +1.0 580,258 + Shewana3_0497 0.48 +0.5 580,268 + Shewana3_0497 0.49 +0.4 580,473 + Shewana3_0497 0.69 +0.1 580,473 + Shewana3_0497 0.69 +0.0 580,481 - Shewana3_0497 0.70 -0.4 580,710 + -0.9
Or see this region's nucleotide sequence