Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0429 and Shewana3_0430 are separated by 230 nucleotides Shewana3_0430 and Shewana3_0431 are separated by 211 nucleotides
Shewana3_0429: Shewana3_0429 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 491,659 to 496,122
_0429
Shewana3_0430: Shewana3_0430 - patatin (RefSeq), at 496,353 to 498,572
_0430
Shewana3_0431: Shewana3_0431 - peptidase M13 (RefSeq), at 498,784 to 500,826
_0431
Position (kb) 496
497
498
499 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 495.371 kb on - strand, within Shewana3_0429 at 495.371 kb on - strand, within Shewana3_0429 at 495.385 kb on - strand, within Shewana3_0429 at 495.385 kb on - strand, within Shewana3_0429 at 495.386 kb on + strand, within Shewana3_0429 at 495.481 kb on + strand, within Shewana3_0429 at 495.489 kb on - strand, within Shewana3_0429 at 495.534 kb on + strand, within Shewana3_0429 at 495.608 kb on + strand, within Shewana3_0429 at 495.711 kb on - strand at 495.816 kb on + strand at 496.003 kb on - strand at 496.017 kb on - strand at 496.029 kb on + strand at 496.117 kb on + strand at 496.117 kb on - strand at 496.429 kb on - strand at 496.429 kb on - strand at 496.587 kb on + strand, within Shewana3_0430 at 496.824 kb on + strand, within Shewana3_0430 at 496.914 kb on + strand, within Shewana3_0430 at 496.933 kb on - strand, within Shewana3_0430 at 496.996 kb on - strand, within Shewana3_0430 at 497.006 kb on + strand, within Shewana3_0430 at 497.006 kb on + strand, within Shewana3_0430 at 497.006 kb on + strand, within Shewana3_0430 at 497.073 kb on + strand, within Shewana3_0430 at 497.193 kb on + strand, within Shewana3_0430 at 497.203 kb on + strand, within Shewana3_0430 at 497.225 kb on - strand, within Shewana3_0430 at 497.338 kb on - strand, within Shewana3_0430 at 497.562 kb on + strand, within Shewana3_0430 at 497.570 kb on - strand, within Shewana3_0430 at 497.608 kb on + strand, within Shewana3_0430 at 497.627 kb on + strand, within Shewana3_0430 at 497.660 kb on + strand, within Shewana3_0430 at 497.661 kb on + strand, within Shewana3_0430 at 497.711 kb on + strand, within Shewana3_0430 at 497.834 kb on + strand, within Shewana3_0430 at 497.882 kb on + strand, within Shewana3_0430 at 497.890 kb on - strand, within Shewana3_0430 at 497.897 kb on - strand, within Shewana3_0430 at 497.903 kb on + strand, within Shewana3_0430 at 497.904 kb on + strand, within Shewana3_0430 at 498.001 kb on - strand, within Shewana3_0430 at 498.015 kb on + strand, within Shewana3_0430 at 498.015 kb on + strand, within Shewana3_0430 at 498.034 kb on + strand, within Shewana3_0430 at 498.134 kb on - strand, within Shewana3_0430 at 498.135 kb on + strand, within Shewana3_0430 at 498.135 kb on + strand, within Shewana3_0430 at 498.396 kb on + strand at 498.432 kb on + strand at 498.440 kb on - strand at 498.442 kb on + strand at 498.452 kb on + strand at 499.215 kb on - strand, within Shewana3_0431 at 499.308 kb on + strand, within Shewana3_0431 at 499.308 kb on + strand, within Shewana3_0431 at 499.310 kb on + strand, within Shewana3_0431 at 499.310 kb on + strand, within Shewana3_0431 at 499.318 kb on - strand, within Shewana3_0431 at 499.318 kb on - strand, within Shewana3_0431 at 499.324 kb on + strand, within Shewana3_0431 at 499.558 kb on - strand, within Shewana3_0431
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 495,371 - Shewana3_0429 0.83 +0.2 495,371 - Shewana3_0429 0.83 -1.2 495,385 - Shewana3_0429 0.83 +0.2 495,385 - Shewana3_0429 0.83 +0.3 495,386 + Shewana3_0429 0.83 +0.5 495,481 + Shewana3_0429 0.86 +1.9 495,489 - Shewana3_0429 0.86 -0.0 495,534 + Shewana3_0429 0.87 +0.5 495,608 + Shewana3_0429 0.88 -4.7 495,711 - -2.2 495,816 + -3.2 496,003 - +0.4 496,017 - -1.0 496,029 + -0.6 496,117 + -0.1 496,117 - +1.2 496,429 - -2.6 496,429 - -4.5 496,587 + Shewana3_0430 0.11 -1.1 496,824 + Shewana3_0430 0.21 -2.9 496,914 + Shewana3_0430 0.25 -5.1 496,933 - Shewana3_0430 0.26 -3.7 496,996 - Shewana3_0430 0.29 -1.1 497,006 + Shewana3_0430 0.29 -5.2 497,006 + Shewana3_0430 0.29 -2.8 497,006 + Shewana3_0430 0.29 -2.7 497,073 + Shewana3_0430 0.32 -5.8 497,193 + Shewana3_0430 0.38 -4.9 497,203 + Shewana3_0430 0.38 -2.7 497,225 - Shewana3_0430 0.39 -0.7 497,338 - Shewana3_0430 0.44 -3.3 497,562 + Shewana3_0430 0.54 -3.4 497,570 - Shewana3_0430 0.55 -2.1 497,608 + Shewana3_0430 0.57 -4.8 497,627 + Shewana3_0430 0.57 -3.9 497,660 + Shewana3_0430 0.59 -6.0 497,661 + Shewana3_0430 0.59 -4.1 497,711 + Shewana3_0430 0.61 -3.8 497,834 + Shewana3_0430 0.67 -3.1 497,882 + Shewana3_0430 0.69 -5.2 497,890 - Shewana3_0430 0.69 -3.0 497,897 - Shewana3_0430 0.70 -4.5 497,903 + Shewana3_0430 0.70 -3.3 497,904 + Shewana3_0430 0.70 -0.9 498,001 - Shewana3_0430 0.74 -4.7 498,015 + Shewana3_0430 0.75 -2.9 498,015 + Shewana3_0430 0.75 -1.4 498,034 + Shewana3_0430 0.76 -2.4 498,134 - Shewana3_0430 0.80 -3.4 498,135 + Shewana3_0430 0.80 -2.5 498,135 + Shewana3_0430 0.80 -4.8 498,396 + -2.2 498,432 + -2.6 498,440 - -2.4 498,442 + -2.9 498,452 + -4.1 499,215 - Shewana3_0431 0.21 -1.0 499,308 + Shewana3_0431 0.26 -0.5 499,308 + Shewana3_0431 0.26 -1.7 499,310 + Shewana3_0431 0.26 -0.0 499,310 + Shewana3_0431 0.26 -0.0 499,318 - Shewana3_0431 0.26 +0.4 499,318 - Shewana3_0431 0.26 +0.3 499,324 + Shewana3_0431 0.26 +0.2 499,558 - Shewana3_0431 0.38 -0.0
Or see this region's nucleotide sequence