Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0349 and Shewana3_0350 are separated by 16 nucleotides Shewana3_0350 and Shewana3_0351 are separated by 151 nucleotides Shewana3_0351 and Shewana3_0352 overlap by 38 nucleotides
Shewana3_0349: Shewana3_0349 - periplasmic sugar-binding protein, putative (RefSeq), at 383,252 to 384,298
_0349
Shewana3_0350: Shewana3_0350 - diguanylate cyclase (RefSeq), at 384,315 to 386,132
_0350
Shewana3_0351: Shewana3_0351 - hypothetical protein (RefSeq), at 386,284 to 386,697
_0351
Shewana3_0352: Shewana3_0352 - amino acid ABC transporter periplasmic protein (RefSeq), at 386,660 to 387,499
_0352
Position (kb) 384
385
386
387 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 383.335 kb on + strand at 383.383 kb on + strand, within Shewana3_0349 at 383.383 kb on + strand, within Shewana3_0349 at 383.391 kb on - strand, within Shewana3_0349 at 383.406 kb on - strand, within Shewana3_0349 at 383.580 kb on + strand, within Shewana3_0349 at 383.587 kb on - strand, within Shewana3_0349 at 383.587 kb on - strand, within Shewana3_0349 at 383.605 kb on + strand, within Shewana3_0349 at 383.701 kb on - strand, within Shewana3_0349 at 383.741 kb on + strand, within Shewana3_0349 at 383.749 kb on - strand, within Shewana3_0349 at 383.788 kb on + strand, within Shewana3_0349 at 383.796 kb on - strand, within Shewana3_0349 at 383.799 kb on + strand, within Shewana3_0349 at 383.807 kb on - strand, within Shewana3_0349 at 383.807 kb on - strand, within Shewana3_0349 at 383.844 kb on + strand, within Shewana3_0349 at 383.955 kb on - strand, within Shewana3_0349 at 383.991 kb on - strand, within Shewana3_0349 at 384.102 kb on - strand, within Shewana3_0349 at 384.169 kb on - strand, within Shewana3_0349 at 384.239 kb on - strand at 384.252 kb on - strand at 384.400 kb on - strand at 384.435 kb on + strand at 384.447 kb on + strand at 384.487 kb on + strand at 384.614 kb on + strand, within Shewana3_0350 at 384.614 kb on + strand, within Shewana3_0350 at 384.614 kb on + strand, within Shewana3_0350 at 384.614 kb on + strand, within Shewana3_0350 at 384.614 kb on + strand, within Shewana3_0350 at 384.622 kb on - strand, within Shewana3_0350 at 384.622 kb on - strand, within Shewana3_0350 at 384.622 kb on - strand, within Shewana3_0350 at 384.689 kb on + strand, within Shewana3_0350 at 384.694 kb on + strand, within Shewana3_0350 at 384.694 kb on + strand, within Shewana3_0350 at 384.694 kb on + strand, within Shewana3_0350 at 384.709 kb on + strand, within Shewana3_0350 at 384.717 kb on - strand, within Shewana3_0350 at 384.717 kb on - strand, within Shewana3_0350 at 384.717 kb on - strand, within Shewana3_0350 at 384.794 kb on + strand, within Shewana3_0350 at 384.901 kb on + strand, within Shewana3_0350 at 384.971 kb on + strand, within Shewana3_0350 at 384.983 kb on - strand, within Shewana3_0350 at 385.088 kb on + strand, within Shewana3_0350 at 385.095 kb on + strand, within Shewana3_0350 at 385.209 kb on - strand, within Shewana3_0350 at 385.334 kb on - strand, within Shewana3_0350 at 385.401 kb on + strand, within Shewana3_0350 at 385.546 kb on + strand, within Shewana3_0350 at 385.554 kb on - strand, within Shewana3_0350 at 385.647 kb on - strand, within Shewana3_0350 at 385.775 kb on + strand, within Shewana3_0350 at 385.783 kb on - strand, within Shewana3_0350 at 385.831 kb on - strand, within Shewana3_0350 at 385.831 kb on - strand, within Shewana3_0350 at 385.841 kb on + strand, within Shewana3_0350 at 385.895 kb on + strand, within Shewana3_0350 at 385.903 kb on - strand, within Shewana3_0350 at 385.924 kb on - strand, within Shewana3_0350 at 386.041 kb on + strand at 386.050 kb on + strand at 386.050 kb on + strand at 386.059 kb on - strand at 386.113 kb on - strand at 386.118 kb on - strand at 386.276 kb on + strand at 386.284 kb on - strand at 386.368 kb on + strand, within Shewana3_0351 at 386.373 kb on + strand, within Shewana3_0351 at 386.436 kb on - strand, within Shewana3_0351 at 386.624 kb on + strand, within Shewana3_0351 at 386.624 kb on + strand, within Shewana3_0351 at 386.759 kb on - strand, within Shewana3_0352 at 386.830 kb on + strand, within Shewana3_0352 at 386.887 kb on + strand, within Shewana3_0352 at 386.895 kb on - strand, within Shewana3_0352 at 386.895 kb on - strand, within Shewana3_0352 at 386.895 kb on - strand, within Shewana3_0352 at 387.045 kb on + strand, within Shewana3_0352
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 383,335 + +0.4 383,383 + Shewana3_0349 0.13 +0.5 383,383 + Shewana3_0349 0.13 -1.5 383,391 - Shewana3_0349 0.13 +0.8 383,406 - Shewana3_0349 0.15 +0.4 383,580 + Shewana3_0349 0.31 +1.2 383,587 - Shewana3_0349 0.32 -2.3 383,587 - Shewana3_0349 0.32 -0.9 383,605 + Shewana3_0349 0.34 -1.2 383,701 - Shewana3_0349 0.43 +0.1 383,741 + Shewana3_0349 0.47 +0.6 383,749 - Shewana3_0349 0.47 -0.7 383,788 + Shewana3_0349 0.51 -0.9 383,796 - Shewana3_0349 0.52 +0.3 383,799 + Shewana3_0349 0.52 +0.6 383,807 - Shewana3_0349 0.53 +0.7 383,807 - Shewana3_0349 0.53 -2.6 383,844 + Shewana3_0349 0.57 +0.8 383,955 - Shewana3_0349 0.67 +0.1 383,991 - Shewana3_0349 0.71 -0.5 384,102 - Shewana3_0349 0.81 -0.3 384,169 - Shewana3_0349 0.88 +0.5 384,239 - +1.2 384,252 - +0.2 384,400 - -1.2 384,435 + +3.1 384,447 + -0.8 384,487 + -3.2 384,614 + Shewana3_0350 0.16 +0.4 384,614 + Shewana3_0350 0.16 +0.1 384,614 + Shewana3_0350 0.16 +1.1 384,614 + Shewana3_0350 0.16 +3.4 384,614 + Shewana3_0350 0.16 -0.6 384,622 - Shewana3_0350 0.17 +0.9 384,622 - Shewana3_0350 0.17 -0.2 384,622 - Shewana3_0350 0.17 -1.2 384,689 + Shewana3_0350 0.21 +0.4 384,694 + Shewana3_0350 0.21 -1.5 384,694 + Shewana3_0350 0.21 +0.3 384,694 + Shewana3_0350 0.21 -1.2 384,709 + Shewana3_0350 0.22 +0.5 384,717 - Shewana3_0350 0.22 +0.1 384,717 - Shewana3_0350 0.22 +0.2 384,717 - Shewana3_0350 0.22 +1.1 384,794 + Shewana3_0350 0.26 -1.9 384,901 + Shewana3_0350 0.32 +0.8 384,971 + Shewana3_0350 0.36 +0.4 384,983 - Shewana3_0350 0.37 -0.3 385,088 + Shewana3_0350 0.43 +0.3 385,095 + Shewana3_0350 0.43 -0.1 385,209 - Shewana3_0350 0.49 -1.1 385,334 - Shewana3_0350 0.56 -1.3 385,401 + Shewana3_0350 0.60 -0.6 385,546 + Shewana3_0350 0.68 -0.1 385,554 - Shewana3_0350 0.68 +0.1 385,647 - Shewana3_0350 0.73 -0.2 385,775 + Shewana3_0350 0.80 +0.5 385,783 - Shewana3_0350 0.81 -1.9 385,831 - Shewana3_0350 0.83 -2.9 385,831 - Shewana3_0350 0.83 +0.0 385,841 + Shewana3_0350 0.84 -0.0 385,895 + Shewana3_0350 0.87 -0.4 385,903 - Shewana3_0350 0.87 -1.3 385,924 - Shewana3_0350 0.89 -0.1 386,041 + -2.9 386,050 + +0.1 386,050 + -0.9 386,059 - +0.3 386,113 - -0.7 386,118 - -0.3 386,276 + -1.0 386,284 - +0.7 386,368 + Shewana3_0351 0.20 -2.9 386,373 + Shewana3_0351 0.21 -0.4 386,436 - Shewana3_0351 0.37 -0.2 386,624 + Shewana3_0351 0.82 +0.5 386,624 + Shewana3_0351 0.82 -1.9 386,759 - Shewana3_0352 0.12 +0.8 386,830 + Shewana3_0352 0.20 -1.7 386,887 + Shewana3_0352 0.27 -0.3 386,895 - Shewana3_0352 0.28 -0.2 386,895 - Shewana3_0352 0.28 +0.3 386,895 - Shewana3_0352 0.28 +1.1 387,045 + Shewana3_0352 0.46 +0.6
Or see this region's nucleotide sequence