Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0341 and Shewana3_0342 are separated by 6 nucleotides Shewana3_0342 and Shewana3_0343 overlap by 1 nucleotides Shewana3_0343 and Shewana3_0344 are separated by 9 nucleotides Shewana3_0344 and Shewana3_0345 overlap by 14 nucleotides Shewana3_0345 and Shewana3_0346 overlap by 8 nucleotides
Shewana3_0341: Shewana3_0341 - integrase catalytic subunit (RefSeq), at 376,047 to 376,850
_0341
Shewana3_0342: Shewana3_0342 - hypothetical protein (RefSeq), at 376,857 to 377,240
_0342
Shewana3_0343: Shewana3_0343 - acyl carrier protein (RefSeq), at 377,240 to 377,488
_0343
Shewana3_0344: Shewana3_0344 - acyl carrier protein, putative (RefSeq), at 377,498 to 377,752
_0344
Shewana3_0345: Shewana3_0345 - phospholipid/glycerol acyltransferase (RefSeq), at 377,739 to 378,587
_0345
Shewana3_0346: Shewana3_0346 - hypothetical protein (RefSeq), at 378,580 to 379,314
_0346
Position (kb) 377
378
379 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 376.875 kb on + strand at 376.943 kb on + strand, within Shewana3_0342 at 377.058 kb on - strand, within Shewana3_0342 at 377.059 kb on - strand, within Shewana3_0342 at 377.113 kb on - strand, within Shewana3_0342 at 377.144 kb on - strand, within Shewana3_0342 at 377.149 kb on - strand, within Shewana3_0342 at 377.243 kb on + strand at 377.265 kb on + strand, within Shewana3_0343 at 377.362 kb on + strand, within Shewana3_0343 at 377.362 kb on + strand, within Shewana3_0343 at 377.372 kb on + strand, within Shewana3_0343 at 377.380 kb on - strand, within Shewana3_0343 at 377.635 kb on + strand, within Shewana3_0344 at 377.683 kb on + strand, within Shewana3_0344 at 378.078 kb on + strand, within Shewana3_0345 at 378.086 kb on - strand, within Shewana3_0345 at 378.113 kb on - strand, within Shewana3_0345 at 378.193 kb on - strand, within Shewana3_0345 at 378.295 kb on + strand, within Shewana3_0345 at 378.350 kb on - strand, within Shewana3_0345 at 378.390 kb on - strand, within Shewana3_0345 at 378.410 kb on + strand, within Shewana3_0345 at 378.539 kb on + strand at 378.547 kb on - strand at 378.567 kb on + strand at 378.624 kb on + strand at 378.675 kb on - strand, within Shewana3_0346 at 378.698 kb on + strand, within Shewana3_0346 at 378.728 kb on - strand, within Shewana3_0346 at 378.774 kb on - strand, within Shewana3_0346 at 379.038 kb on + strand, within Shewana3_0346 at 379.046 kb on - strand, within Shewana3_0346 at 379.090 kb on + strand, within Shewana3_0346 at 379.169 kb on - strand, within Shewana3_0346 at 379.190 kb on - strand, within Shewana3_0346 at 379.190 kb on - strand, within Shewana3_0346 at 379.332 kb on + strand at 379.340 kb on - strand at 379.418 kb on - strand at 379.467 kb on + strand at 379.583 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 376,875 + -0.3 376,943 + Shewana3_0342 0.22 +0.5 377,058 - Shewana3_0342 0.52 +0.4 377,059 - Shewana3_0342 0.53 -2.8 377,113 - Shewana3_0342 0.67 -0.6 377,144 - Shewana3_0342 0.75 +0.1 377,149 - Shewana3_0342 0.76 +3.1 377,243 + +0.3 377,265 + Shewana3_0343 0.10 -2.2 377,362 + Shewana3_0343 0.49 +0.5 377,362 + Shewana3_0343 0.49 -1.0 377,372 + Shewana3_0343 0.53 +0.2 377,380 - Shewana3_0343 0.56 -0.9 377,635 + Shewana3_0344 0.54 +0.5 377,683 + Shewana3_0344 0.73 +1.2 378,078 + Shewana3_0345 0.40 +0.5 378,086 - Shewana3_0345 0.41 -0.2 378,113 - Shewana3_0345 0.44 +2.1 378,193 - Shewana3_0345 0.53 -0.2 378,295 + Shewana3_0345 0.65 -0.6 378,350 - Shewana3_0345 0.72 +1.3 378,390 - Shewana3_0345 0.77 -2.8 378,410 + Shewana3_0345 0.79 -0.2 378,539 + -1.9 378,547 - -1.0 378,567 + -0.6 378,624 + -1.1 378,675 - Shewana3_0346 0.13 +0.4 378,698 + Shewana3_0346 0.16 +0.4 378,728 - Shewana3_0346 0.20 +0.7 378,774 - Shewana3_0346 0.26 -1.1 379,038 + Shewana3_0346 0.62 +2.4 379,046 - Shewana3_0346 0.63 +0.8 379,090 + Shewana3_0346 0.69 -0.2 379,169 - Shewana3_0346 0.80 -0.2 379,190 - Shewana3_0346 0.83 +1.1 379,190 - Shewana3_0346 0.83 +0.5 379,332 + +0.6 379,340 - +3.4 379,418 - -1.3 379,467 + +0.1 379,583 + -1.9
Or see this region's nucleotide sequence