Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0332 and Shewana3_0333 are separated by 9 nucleotides Shewana3_0333 and Shewana3_0334 overlap by 4 nucleotides Shewana3_0334 and Shewana3_0335 overlap by 4 nucleotides
Shewana3_0332: Shewana3_0332 - hypothetical protein (RefSeq), at 366,472 to 368,991
_0332
Shewana3_0333: Shewana3_0333 - hypothetical protein (RefSeq), at 369,001 to 369,843
_0333
Shewana3_0334: Shewana3_0334 - 4-hydroxybenzoyl-CoA thioesterase (RefSeq), at 369,840 to 370,274
_0334
Shewana3_0335: Shewana3_0335 - histidine ammonia-lyase (RefSeq), at 370,271 to 371,836
_0335
Position (kb) 369
370
371 Strain fitness (log2 ratio) -2
-1
0
1
2 at 368.893 kb on - strand at 369.085 kb on - strand at 369.140 kb on - strand, within Shewana3_0333 at 369.142 kb on + strand, within Shewana3_0333 at 369.147 kb on + strand, within Shewana3_0333 at 369.147 kb on + strand, within Shewana3_0333 at 369.150 kb on - strand, within Shewana3_0333 at 369.155 kb on - strand, within Shewana3_0333 at 369.155 kb on - strand, within Shewana3_0333 at 369.155 kb on - strand, within Shewana3_0333 at 369.155 kb on - strand, within Shewana3_0333 at 369.288 kb on - strand, within Shewana3_0333 at 369.381 kb on - strand, within Shewana3_0333 at 369.502 kb on - strand, within Shewana3_0333 at 369.561 kb on - strand, within Shewana3_0333 at 369.573 kb on + strand, within Shewana3_0333 at 369.693 kb on - strand, within Shewana3_0333 at 369.693 kb on - strand, within Shewana3_0333 at 369.752 kb on - strand, within Shewana3_0333 at 369.757 kb on + strand, within Shewana3_0333 at 369.765 kb on + strand at 369.765 kb on + strand at 369.951 kb on + strand, within Shewana3_0334 at 369.954 kb on - strand, within Shewana3_0334 at 369.954 kb on - strand, within Shewana3_0334 at 369.960 kb on - strand, within Shewana3_0334 at 370.195 kb on - strand, within Shewana3_0334 at 370.250 kb on + strand at 370.324 kb on + strand at 370.439 kb on + strand, within Shewana3_0335 at 370.479 kb on - strand, within Shewana3_0335 at 370.498 kb on + strand, within Shewana3_0335 at 370.530 kb on + strand, within Shewana3_0335 at 370.597 kb on - strand, within Shewana3_0335 at 370.601 kb on - strand, within Shewana3_0335 at 370.612 kb on + strand, within Shewana3_0335 at 370.612 kb on + strand, within Shewana3_0335 at 370.612 kb on + strand, within Shewana3_0335 at 370.612 kb on + strand, within Shewana3_0335 at 370.759 kb on + strand, within Shewana3_0335 at 370.869 kb on - strand, within Shewana3_0335 at 371.002 kb on + strand, within Shewana3_0335 at 371.015 kb on + strand, within Shewana3_0335
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 368,893 - -0.6 369,085 - -0.6 369,140 - Shewana3_0333 0.16 -1.4 369,142 + Shewana3_0333 0.17 -0.7 369,147 + Shewana3_0333 0.17 -0.8 369,147 + Shewana3_0333 0.17 -0.4 369,150 - Shewana3_0333 0.18 -0.1 369,155 - Shewana3_0333 0.18 -0.1 369,155 - Shewana3_0333 0.18 -0.2 369,155 - Shewana3_0333 0.18 +0.6 369,155 - Shewana3_0333 0.18 -0.7 369,288 - Shewana3_0333 0.34 +0.1 369,381 - Shewana3_0333 0.45 -1.6 369,502 - Shewana3_0333 0.59 +0.2 369,561 - Shewana3_0333 0.66 +0.5 369,573 + Shewana3_0333 0.68 -1.3 369,693 - Shewana3_0333 0.82 +1.8 369,693 - Shewana3_0333 0.82 +0.6 369,752 - Shewana3_0333 0.89 +1.3 369,757 + Shewana3_0333 0.90 +0.2 369,765 + -0.2 369,765 + -0.7 369,951 + Shewana3_0334 0.26 +1.8 369,954 - Shewana3_0334 0.26 -0.8 369,954 - Shewana3_0334 0.26 +0.6 369,960 - Shewana3_0334 0.28 +0.3 370,195 - Shewana3_0334 0.82 +0.8 370,250 + +0.5 370,324 + -0.1 370,439 + Shewana3_0335 0.11 +0.6 370,479 - Shewana3_0335 0.13 -0.8 370,498 + Shewana3_0335 0.14 -0.9 370,530 + Shewana3_0335 0.17 -0.1 370,597 - Shewana3_0335 0.21 -0.0 370,601 - Shewana3_0335 0.21 -0.1 370,612 + Shewana3_0335 0.22 +0.1 370,612 + Shewana3_0335 0.22 -1.3 370,612 + Shewana3_0335 0.22 +0.7 370,612 + Shewana3_0335 0.22 -1.3 370,759 + Shewana3_0335 0.31 -0.6 370,869 - Shewana3_0335 0.38 +0.1 371,002 + Shewana3_0335 0.47 -2.1 371,015 + Shewana3_0335 0.48 -2.0
Or see this region's nucleotide sequence