Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0299 and glnA are separated by 407 nucleotides glnA and Shewana3_0301 are separated by 985 nucleotides
Shewana3_0299: Shewana3_0299 - TonB-dependent siderophore receptor (RefSeq), at 331,825 to 334,062
_0299
Shewana3_0300: glnA - glutamine synthetase (RefSeq), at 334,470 to 335,879
glnA
Shewana3_0301: Shewana3_0301 - GTP-binding protein TypA (RefSeq), at 336,865 to 338,676
_0301
Position (kb) 334
335
336 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 333.558 kb on - strand, within Shewana3_0299 at 333.683 kb on - strand, within Shewana3_0299 at 333.683 kb on - strand, within Shewana3_0299 at 333.899 kb on + strand at 333.908 kb on + strand at 334.029 kb on + strand at 334.052 kb on + strand at 334.060 kb on - strand at 334.090 kb on + strand at 334.098 kb on + strand at 334.106 kb on - strand at 334.118 kb on - strand at 334.339 kb on - strand at 334.354 kb on - strand at 334.361 kb on - strand at 334.477 kb on + strand at 334.549 kb on + strand at 334.789 kb on - strand, within glnA at 334.871 kb on - strand, within glnA at 334.933 kb on - strand, within glnA at 334.984 kb on + strand, within glnA at 334.984 kb on + strand, within glnA at 335.044 kb on - strand, within glnA at 335.134 kb on + strand, within glnA at 335.145 kb on + strand, within glnA at 335.145 kb on + strand, within glnA at 335.145 kb on + strand, within glnA at 335.153 kb on - strand, within glnA at 335.153 kb on - strand, within glnA at 335.153 kb on - strand, within glnA at 335.319 kb on + strand, within glnA at 335.332 kb on + strand, within glnA at 335.340 kb on - strand, within glnA at 335.371 kb on + strand, within glnA at 335.455 kb on - strand, within glnA at 335.475 kb on - strand, within glnA at 335.501 kb on + strand, within glnA at 335.507 kb on - strand, within glnA at 335.582 kb on - strand, within glnA at 335.624 kb on - strand, within glnA at 335.654 kb on - strand, within glnA at 335.808 kb on - strand at 335.817 kb on + strand at 336.057 kb on - strand at 336.112 kb on - strand at 336.127 kb on + strand at 336.137 kb on - strand at 336.137 kb on - strand at 336.185 kb on - strand at 336.265 kb on + strand at 336.299 kb on + strand at 336.336 kb on + strand at 336.448 kb on + strand at 336.497 kb on - strand at 336.555 kb on + strand at 336.683 kb on + strand at 336.767 kb on + strand at 336.855 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 333,558 - Shewana3_0299 0.77 +0.3 333,683 - Shewana3_0299 0.83 +0.0 333,683 - Shewana3_0299 0.83 +0.3 333,899 + -1.2 333,908 + +1.4 334,029 + +0.2 334,052 + -1.4 334,060 - -1.7 334,090 + -0.2 334,098 + -0.4 334,106 - -2.4 334,118 - -0.3 334,339 - -1.6 334,354 - +0.8 334,361 - +3.4 334,477 + -0.8 334,549 + +0.7 334,789 - glnA Shewana3_0300 0.23 -1.6 334,871 - glnA Shewana3_0300 0.28 -2.0 334,933 - glnA Shewana3_0300 0.33 -2.7 334,984 + glnA Shewana3_0300 0.36 -0.3 334,984 + glnA Shewana3_0300 0.36 -1.3 335,044 - glnA Shewana3_0300 0.41 -0.8 335,134 + glnA Shewana3_0300 0.47 +0.7 335,145 + glnA Shewana3_0300 0.48 -0.3 335,145 + glnA Shewana3_0300 0.48 -2.2 335,145 + glnA Shewana3_0300 0.48 -0.3 335,153 - glnA Shewana3_0300 0.48 -0.8 335,153 - glnA Shewana3_0300 0.48 +0.2 335,153 - glnA Shewana3_0300 0.48 -1.4 335,319 + glnA Shewana3_0300 0.60 -2.7 335,332 + glnA Shewana3_0300 0.61 -2.1 335,340 - glnA Shewana3_0300 0.62 -1.8 335,371 + glnA Shewana3_0300 0.64 -0.6 335,455 - glnA Shewana3_0300 0.70 -1.6 335,475 - glnA Shewana3_0300 0.71 -3.8 335,501 + glnA Shewana3_0300 0.73 -1.7 335,507 - glnA Shewana3_0300 0.74 -1.1 335,582 - glnA Shewana3_0300 0.79 -0.8 335,624 - glnA Shewana3_0300 0.82 -2.5 335,654 - glnA Shewana3_0300 0.84 -1.4 335,808 - -1.6 335,817 + -1.4 336,057 - -5.4 336,112 - -1.5 336,127 + -2.2 336,137 - -0.4 336,137 - -0.7 336,185 - -1.4 336,265 + -0.1 336,299 + +0.1 336,336 + -1.4 336,448 + +0.2 336,497 - +0.9 336,555 + -1.2 336,683 + -4.3 336,767 + -0.5 336,855 + -3.1
Or see this region's nucleotide sequence