Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0046 and Shewana3_0047 are separated by 21 nucleotides Shewana3_0047 and Shewana3_0048 overlap by 26 nucleotides Shewana3_0048 and Shewana3_0049 are separated by 12 nucleotides
Shewana3_0046: Shewana3_0046 - hypothetical protein (RefSeq), at 56,354 to 56,608
_0046
Shewana3_0047: Shewana3_0047 - BadM/Rrf2 family transcriptional regulator (RefSeq), at 56,630 to 57,085
_0047
Shewana3_0048: Shewana3_0048 - protein of unknown function DUF610, YibQ (RefSeq), at 57,060 to 57,815
_0048
Shewana3_0049: Shewana3_0049 - C-terminal processing peptidase-3 (RefSeq), at 57,828 to 59,033
_0049
Position (kb) 57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 56.283 kb on + strand at 56.291 kb on - strand at 56.309 kb on - strand at 56.501 kb on - strand, within Shewana3_0046 at 56.540 kb on - strand, within Shewana3_0046 at 56.551 kb on + strand, within Shewana3_0046 at 56.553 kb on + strand, within Shewana3_0046 at 56.652 kb on + strand at 57.215 kb on + strand, within Shewana3_0048 at 57.223 kb on - strand, within Shewana3_0048 at 57.283 kb on - strand, within Shewana3_0048 at 57.401 kb on + strand, within Shewana3_0048 at 57.403 kb on - strand, within Shewana3_0048 at 57.431 kb on - strand, within Shewana3_0048 at 57.569 kb on - strand, within Shewana3_0048 at 58.016 kb on - strand, within Shewana3_0049 at 58.089 kb on + strand, within Shewana3_0049 at 58.255 kb on + strand, within Shewana3_0049 at 58.376 kb on + strand, within Shewana3_0049 at 58.376 kb on + strand, within Shewana3_0049 at 58.384 kb on - strand, within Shewana3_0049 at 58.384 kb on - strand, within Shewana3_0049 at 58.384 kb on - strand, within Shewana3_0049 at 58.384 kb on - strand, within Shewana3_0049 at 58.540 kb on - strand, within Shewana3_0049 at 58.544 kb on + strand, within Shewana3_0049 at 58.704 kb on + strand, within Shewana3_0049
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 56,283 + -3.4 56,291 - +0.1 56,309 - -1.8 56,501 - Shewana3_0046 0.58 -0.9 56,540 - Shewana3_0046 0.73 -1.7 56,551 + Shewana3_0046 0.77 -2.4 56,553 + Shewana3_0046 0.78 +1.5 56,652 + -2.7 57,215 + Shewana3_0048 0.21 -0.2 57,223 - Shewana3_0048 0.22 -0.1 57,283 - Shewana3_0048 0.29 -1.1 57,401 + Shewana3_0048 0.45 -1.9 57,403 - Shewana3_0048 0.45 -0.0 57,431 - Shewana3_0048 0.49 +1.5 57,569 - Shewana3_0048 0.67 +0.4 58,016 - Shewana3_0049 0.16 +0.5 58,089 + Shewana3_0049 0.22 +0.2 58,255 + Shewana3_0049 0.35 +1.0 58,376 + Shewana3_0049 0.45 +0.5 58,376 + Shewana3_0049 0.45 +2.5 58,384 - Shewana3_0049 0.46 -1.7 58,384 - Shewana3_0049 0.46 -0.0 58,384 - Shewana3_0049 0.46 +2.1 58,384 - Shewana3_0049 0.46 +0.6 58,540 - Shewana3_0049 0.59 +1.7 58,544 + Shewana3_0049 0.59 +0.4 58,704 + Shewana3_0049 0.73 -0.2
Or see this region's nucleotide sequence