Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0031 and trkA are separated by 11 nucleotides trkA and Shewana3_0033 are separated by 15 nucleotides
Shewana3_0031: Shewana3_0031 - TrkH family potassium uptake protein (RefSeq), at 37,204 to 38,646
_0031
Shewana3_0032: trkA - potassium transporter peripheral membrane component (RefSeq), at 38,658 to 40,067
trkA
Shewana3_0033: Shewana3_0033 - sun protein (RefSeq), at 40,083 to 41,372
_0033
Position (kb) 38
39
40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 37.739 kb on - strand, within Shewana3_0031 at 37.834 kb on + strand, within Shewana3_0031 at 38.063 kb on + strand, within Shewana3_0031 at 38.162 kb on + strand, within Shewana3_0031 at 38.180 kb on - strand, within Shewana3_0031 at 38.263 kb on + strand, within Shewana3_0031 at 38.314 kb on - strand, within Shewana3_0031 at 38.348 kb on - strand, within Shewana3_0031 at 38.549 kb on + strand at 38.566 kb on + strand at 38.569 kb on - strand at 38.581 kb on + strand at 40.163 kb on - strand at 40.189 kb on - strand at 40.411 kb on + strand, within Shewana3_0033 at 40.414 kb on - strand, within Shewana3_0033 at 40.419 kb on - strand, within Shewana3_0033 at 40.419 kb on - strand, within Shewana3_0033 at 40.443 kb on + strand, within Shewana3_0033 at 40.451 kb on - strand, within Shewana3_0033 at 40.583 kb on + strand, within Shewana3_0033 at 40.677 kb on + strand, within Shewana3_0033 at 40.685 kb on - strand, within Shewana3_0033 at 40.772 kb on - strand, within Shewana3_0033 at 40.814 kb on - strand, within Shewana3_0033 at 40.875 kb on + strand, within Shewana3_0033 at 40.889 kb on + strand, within Shewana3_0033 at 40.934 kb on + strand, within Shewana3_0033 at 40.958 kb on + strand, within Shewana3_0033 at 40.958 kb on + strand, within Shewana3_0033 at 40.966 kb on - strand, within Shewana3_0033 at 40.978 kb on + strand, within Shewana3_0033 at 41.020 kb on + strand, within Shewana3_0033 at 41.030 kb on + strand, within Shewana3_0033
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 37,739 - Shewana3_0031 0.37 -0.9 37,834 + Shewana3_0031 0.44 -2.6 38,063 + Shewana3_0031 0.60 -0.2 38,162 + Shewana3_0031 0.66 +0.5 38,180 - Shewana3_0031 0.68 -2.6 38,263 + Shewana3_0031 0.73 -2.6 38,314 - Shewana3_0031 0.77 -1.7 38,348 - Shewana3_0031 0.79 +2.8 38,549 + -2.2 38,566 + +0.8 38,569 - -0.3 38,581 + +0.7 40,163 - +1.3 40,189 - +1.1 40,411 + Shewana3_0033 0.25 +0.6 40,414 - Shewana3_0033 0.26 -2.9 40,419 - Shewana3_0033 0.26 -0.6 40,419 - Shewana3_0033 0.26 +1.4 40,443 + Shewana3_0033 0.28 +0.3 40,451 - Shewana3_0033 0.29 +1.3 40,583 + Shewana3_0033 0.39 +2.0 40,677 + Shewana3_0033 0.46 +2.2 40,685 - Shewana3_0033 0.47 +0.7 40,772 - Shewana3_0033 0.53 +1.6 40,814 - Shewana3_0033 0.57 +1.4 40,875 + Shewana3_0033 0.61 +2.1 40,889 + Shewana3_0033 0.62 +1.9 40,934 + Shewana3_0033 0.66 +0.9 40,958 + Shewana3_0033 0.68 +2.7 40,958 + Shewana3_0033 0.68 +0.7 40,966 - Shewana3_0033 0.68 +1.6 40,978 + Shewana3_0033 0.69 +0.5 41,020 + Shewana3_0033 0.73 +1.1 41,030 + Shewana3_0033 0.73 +1.0
Or see this region's nucleotide sequence