Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4341 and Shewana3_4342 are separated by 71 nucleotides Shewana3_4342 and Shewana3_4343 are separated by 15 nucleotides Shewana3_4343 and Shewana3_4344 are separated by 27 nucleotides Shewana3_4344 and Shewana3_4345 are separated by 38 nucleotides
Shewana3_4341: Shewana3_4341 - putative transcriptional regulator MerR (RefSeq), at 228,689 to 229,144
_4341
Shewana3_4342: Shewana3_4342 - putative mercuric transport protein (RefSeq), at 229,216 to 229,611
_4342
Shewana3_4343: Shewana3_4343 - mercuric transport protein periplasmic component (RefSeq), at 229,627 to 229,902
_4343
Shewana3_4344: Shewana3_4344 - putative mercury transport protein MerC (RefSeq), at 229,930 to 230,355
_4344
Shewana3_4345: Shewana3_4345 - putative mercuric reductase (RefSeq), at 230,394 to 232,079
_4345
Position (kb) 229
230
231 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 228.946 kb on + strand, within Shewana3_4341 at 228.987 kb on + strand, within Shewana3_4341 at 229.077 kb on - strand, within Shewana3_4341 at 229.240 kb on - strand at 229.427 kb on + strand, within Shewana3_4342 at 229.432 kb on + strand, within Shewana3_4342 at 229.446 kb on + strand, within Shewana3_4342 at 229.674 kb on + strand, within Shewana3_4343 at 229.735 kb on - strand, within Shewana3_4343 at 229.784 kb on - strand, within Shewana3_4343 at 229.992 kb on + strand, within Shewana3_4344 at 230.244 kb on + strand, within Shewana3_4344 at 230.244 kb on + strand, within Shewana3_4344 at 230.245 kb on - strand, within Shewana3_4344 at 230.252 kb on - strand, within Shewana3_4344 at 230.297 kb on + strand, within Shewana3_4344 at 230.307 kb on + strand, within Shewana3_4344 at 230.430 kb on - strand at 230.492 kb on - strand at 230.519 kb on - strand at 230.552 kb on + strand at 230.669 kb on - strand, within Shewana3_4345 at 230.812 kb on + strand, within Shewana3_4345 at 230.968 kb on - strand, within Shewana3_4345 at 231.014 kb on + strand, within Shewana3_4345
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 228,946 + Shewana3_4341 0.56 -0.5 228,987 + Shewana3_4341 0.65 +0.6 229,077 - Shewana3_4341 0.85 -2.0 229,240 - -0.3 229,427 + Shewana3_4342 0.53 +0.5 229,432 + Shewana3_4342 0.55 +1.1 229,446 + Shewana3_4342 0.58 -1.2 229,674 + Shewana3_4343 0.17 -0.1 229,735 - Shewana3_4343 0.39 +2.4 229,784 - Shewana3_4343 0.57 +0.3 229,992 + Shewana3_4344 0.15 +0.5 230,244 + Shewana3_4344 0.74 -0.8 230,244 + Shewana3_4344 0.74 +0.2 230,245 - Shewana3_4344 0.74 -0.5 230,252 - Shewana3_4344 0.76 +0.6 230,297 + Shewana3_4344 0.86 +3.4 230,307 + Shewana3_4344 0.88 +1.6 230,430 - -1.4 230,492 - -0.6 230,519 - -0.4 230,552 + -0.0 230,669 - Shewana3_4345 0.16 -0.4 230,812 + Shewana3_4345 0.25 -0.4 230,968 - Shewana3_4345 0.34 -0.8 231,014 + Shewana3_4345 0.37 +2.5
Or see this region's nucleotide sequence