Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4326 and Shewana3_4327 are separated by 236 nucleotides Shewana3_4327 and Shewana3_4328 are separated by 137 nucleotides
Shewana3_4326: Shewana3_4326 - methionine sulfoxide reductase B (RefSeq), at 215,589 to 216,035
_4326
Shewana3_4327: Shewana3_4327 - hypothetical protein (RefSeq), at 216,272 to 216,787
_4327
Shewana3_4328: Shewana3_4328 - alkylhydroperoxidase (RefSeq), at 216,925 to 217,479
_4328
Position (kb) 216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 215.964 kb on - strand, within Shewana3_4326 at 215.974 kb on + strand, within Shewana3_4326 at 215.974 kb on + strand, within Shewana3_4326 at 215.994 kb on - strand at 216.058 kb on + strand at 216.148 kb on + strand at 216.156 kb on - strand at 216.156 kb on - strand at 216.218 kb on + strand at 216.576 kb on + strand, within Shewana3_4327 at 216.576 kb on + strand, within Shewana3_4327 at 216.702 kb on + strand, within Shewana3_4327 at 216.823 kb on + strand at 216.823 kb on + strand at 216.823 kb on + strand at 216.888 kb on - strand at 216.965 kb on + strand at 216.978 kb on - strand at 217.070 kb on + strand, within Shewana3_4328 at 217.078 kb on - strand, within Shewana3_4328 at 217.182 kb on + strand, within Shewana3_4328 at 217.267 kb on + strand, within Shewana3_4328 at 217.306 kb on + strand, within Shewana3_4328 at 217.335 kb on - strand, within Shewana3_4328 at 217.335 kb on - strand, within Shewana3_4328 at 217.355 kb on - strand, within Shewana3_4328 at 217.407 kb on + strand, within Shewana3_4328 at 217.423 kb on + strand, within Shewana3_4328 at 217.428 kb on + strand at 217.455 kb on + strand at 217.625 kb on - strand at 217.650 kb on + strand at 217.669 kb on - strand at 217.774 kb on + strand at 217.796 kb on + strand at 217.831 kb on + strand at 217.831 kb on + strand at 217.834 kb on + strand at 217.963 kb on + strand at 218.039 kb on + strand at 218.047 kb on - strand at 218.123 kb on + strand at 218.123 kb on + strand at 218.131 kb on - strand at 218.131 kb on - strand at 218.131 kb on - strand at 218.162 kb on - strand at 218.192 kb on - strand at 218.201 kb on + strand at 218.201 kb on + strand at 218.201 kb on + strand at 218.209 kb on - strand at 218.307 kb on - strand at 218.419 kb on - strand at 218.430 kb on + strand at 218.461 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 215,964 - Shewana3_4326 0.84 -2.8 215,974 + Shewana3_4326 0.86 +2.6 215,974 + Shewana3_4326 0.86 -0.9 215,994 - +2.0 216,058 + -0.9 216,148 + +0.0 216,156 - -1.1 216,156 - -0.3 216,218 + -1.2 216,576 + Shewana3_4327 0.59 +0.4 216,576 + Shewana3_4327 0.59 +1.0 216,702 + Shewana3_4327 0.83 +0.7 216,823 + +2.5 216,823 + +0.2 216,823 + +0.2 216,888 - -1.1 216,965 + +0.7 216,978 - +0.2 217,070 + Shewana3_4328 0.26 +2.5 217,078 - Shewana3_4328 0.28 +0.1 217,182 + Shewana3_4328 0.46 +0.4 217,267 + Shewana3_4328 0.62 +1.7 217,306 + Shewana3_4328 0.69 +1.0 217,335 - Shewana3_4328 0.74 -2.0 217,335 - Shewana3_4328 0.74 +0.4 217,355 - Shewana3_4328 0.77 -0.5 217,407 + Shewana3_4328 0.87 +1.2 217,423 + Shewana3_4328 0.90 -1.9 217,428 + -2.1 217,455 + -2.1 217,625 - +0.4 217,650 + +2.0 217,669 - -0.3 217,774 + +1.5 217,796 + +1.0 217,831 + +3.7 217,831 + -0.6 217,834 + -0.8 217,963 + +0.6 218,039 + +1.5 218,047 - +0.2 218,123 + +0.6 218,123 + -0.9 218,131 - -0.9 218,131 - +0.1 218,131 - +1.7 218,162 - -0.9 218,192 - +0.5 218,201 + +0.4 218,201 + +2.0 218,201 + +0.6 218,209 - +0.4 218,307 - -0.5 218,419 - +0.8 218,430 + +0.3 218,461 - -2.1
Or see this region's nucleotide sequence