Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4273

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4272 and Shewana3_4273 are separated by 110 nucleotidesShewana3_4273 and Shewana3_4274 are separated by 13 nucleotidesShewana3_4274 and Shewana3_4275 are separated by 87 nucleotides Shewana3_4272: Shewana3_4272 - hypothetical protein (RefSeq), at 149,909 to 155,239 _4272 Shewana3_4273: Shewana3_4273 - hypothetical protein (RefSeq), at 155,350 to 156,240 _4273 Shewana3_4274: Shewana3_4274 - hypothetical protein (RefSeq), at 156,254 to 156,799 _4274 Shewana3_4275: Shewana3_4275 - hypothetical protein (RefSeq), at 156,887 to 157,792 _4275 Position (kb) 155 156 157Strain fitness (log2 ratio) -3 -2 -1 0 1at 154.625 kb on + strand, within Shewana3_4272at 154.865 kb on + strandat 154.918 kb on + strandat 154.932 kb on + strandat 154.932 kb on + strandat 155.085 kb on - strandat 155.195 kb on + strandat 155.316 kb on - strandat 155.413 kb on - strandat 155.430 kb on - strandat 155.473 kb on + strand, within Shewana3_4273at 155.577 kb on - strand, within Shewana3_4273at 155.577 kb on - strand, within Shewana3_4273at 155.732 kb on + strand, within Shewana3_4273at 155.897 kb on + strand, within Shewana3_4273at 155.968 kb on + strand, within Shewana3_4273at 155.969 kb on - strand, within Shewana3_4273at 155.969 kb on - strand, within Shewana3_4273at 156.038 kb on + strand, within Shewana3_4273at 156.134 kb on - strand, within Shewana3_4273at 156.210 kb on - strandat 156.324 kb on + strand, within Shewana3_4274at 156.357 kb on - strand, within Shewana3_4274at 156.437 kb on + strand, within Shewana3_4274at 156.469 kb on + strand, within Shewana3_4274at 156.469 kb on + strand, within Shewana3_4274at 156.518 kb on - strand, within Shewana3_4274at 156.602 kb on + strand, within Shewana3_4274at 156.685 kb on + strand, within Shewana3_4274at 156.741 kb on + strand, within Shewana3_4274at 157.103 kb on - strand, within Shewana3_4275at 157.103 kb on - strand, within Shewana3_4275at 157.120 kb on - strand, within Shewana3_4275at 157.129 kb on - strand, within Shewana3_4275

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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154,625 + Shewana3_4272 0.88 -2.4
154,865 + -0.2
154,918 + -0.8
154,932 + +0.4
154,932 + +0.5
155,085 - -0.1
155,195 + +1.1
155,316 - -2.7
155,413 - +0.1
155,430 - +1.2
155,473 + Shewana3_4273 0.14 -0.6
155,577 - Shewana3_4273 0.25 -0.4
155,577 - Shewana3_4273 0.25 +0.1
155,732 + Shewana3_4273 0.43 +0.8
155,897 + Shewana3_4273 0.61 +0.4
155,968 + Shewana3_4273 0.69 +1.6
155,969 - Shewana3_4273 0.69 +0.7
155,969 - Shewana3_4273 0.69 +0.7
156,038 + Shewana3_4273 0.77 +0.3
156,134 - Shewana3_4273 0.88 +0.9
156,210 - +0.8
156,324 + Shewana3_4274 0.13 -0.5
156,357 - Shewana3_4274 0.19 +1.7
156,437 + Shewana3_4274 0.34 -1.8
156,469 + Shewana3_4274 0.39 +0.5
156,469 + Shewana3_4274 0.39 -3.1
156,518 - Shewana3_4274 0.48 +1.1
156,602 + Shewana3_4274 0.64 -0.1
156,685 + Shewana3_4274 0.79 +0.5
156,741 + Shewana3_4274 0.89 -0.8
157,103 - Shewana3_4275 0.24 -0.0
157,103 - Shewana3_4275 0.24 -0.1
157,120 - Shewana3_4275 0.26 +0.1
157,129 - Shewana3_4275 0.27 -1.9

Or see this region's nucleotide sequence