Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4233 and Shewana3_4234 are separated by 866 nucleotides Shewana3_4234 and Shewana3_4235 are separated by 22 nucleotides Shewana3_4235 and Shewana3_4236 are separated by 44 nucleotides Shewana3_4236 and Shewana3_4237 are separated by 105 nucleotides
Shewana3_4233: Shewana3_4233 - hypothetical protein (RefSeq), at 106,728 to 106,979
_4233
Shewana3_4234: Shewana3_4234 - IS605 family transposase OrfB (RefSeq), at 107,846 to 108,745
_4234
Shewana3_4235: Shewana3_4235 - virulence protein VsdF (RefSeq), at 108,768 to 109,001
_4235
Shewana3_4236: Shewana3_4236 - transposase IS200-family protein (RefSeq), at 109,046 to 109,474
_4236
Shewana3_4237: Shewana3_4237 - XRE family transcriptional regulator (RefSeq), at 109,580 to 109,891
_4237
Position (kb) 107
108
109 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 106.929 kb on - strand, within Shewana3_4233 at 107.088 kb on + strand at 107.096 kb on - strand at 107.178 kb on - strand at 107.218 kb on - strand at 107.421 kb on - strand at 107.508 kb on + strand at 107.513 kb on + strand at 107.646 kb on + strand at 107.836 kb on + strand at 108.027 kb on + strand, within Shewana3_4234 at 108.035 kb on - strand, within Shewana3_4234 at 108.047 kb on - strand, within Shewana3_4234 at 108.200 kb on + strand, within Shewana3_4234 at 108.442 kb on - strand, within Shewana3_4234 at 108.477 kb on - strand, within Shewana3_4234 at 108.479 kb on + strand, within Shewana3_4234 at 108.507 kb on + strand, within Shewana3_4234 at 108.515 kb on - strand, within Shewana3_4234 at 108.520 kb on - strand, within Shewana3_4234 at 108.546 kb on - strand, within Shewana3_4234 at 108.628 kb on + strand, within Shewana3_4234 at 108.628 kb on + strand, within Shewana3_4234 at 108.629 kb on + strand, within Shewana3_4234 at 108.738 kb on - strand at 108.818 kb on - strand, within Shewana3_4235 at 108.818 kb on - strand, within Shewana3_4235 at 108.879 kb on - strand, within Shewana3_4235 at 108.924 kb on - strand, within Shewana3_4235 at 108.924 kb on - strand, within Shewana3_4235 at 108.966 kb on - strand, within Shewana3_4235 at 108.987 kb on - strand at 109.107 kb on + strand, within Shewana3_4236 at 109.293 kb on + strand, within Shewana3_4236 at 109.354 kb on + strand, within Shewana3_4236 at 109.356 kb on + strand, within Shewana3_4236 at 109.356 kb on + strand, within Shewana3_4236 at 109.362 kb on - strand, within Shewana3_4236 at 109.366 kb on + strand, within Shewana3_4236 at 109.375 kb on - strand, within Shewana3_4236 at 109.382 kb on + strand, within Shewana3_4236 at 109.391 kb on + strand, within Shewana3_4236 at 109.391 kb on + strand, within Shewana3_4236 at 109.419 kb on + strand, within Shewana3_4236 at 109.502 kb on - strand at 109.655 kb on - strand, within Shewana3_4237 at 109.738 kb on + strand, within Shewana3_4237 at 109.738 kb on + strand, within Shewana3_4237
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 106,929 - Shewana3_4233 0.80 -1.0 107,088 + -0.9 107,096 - +0.9 107,178 - +3.2 107,218 - -0.8 107,421 - -0.7 107,508 + +1.0 107,513 + -0.6 107,646 + +0.4 107,836 + -3.1 108,027 + Shewana3_4234 0.20 -1.3 108,035 - Shewana3_4234 0.21 +0.1 108,047 - Shewana3_4234 0.22 +0.6 108,200 + Shewana3_4234 0.39 -1.6 108,442 - Shewana3_4234 0.66 +0.8 108,477 - Shewana3_4234 0.70 +0.4 108,479 + Shewana3_4234 0.70 +0.6 108,507 + Shewana3_4234 0.73 +1.9 108,515 - Shewana3_4234 0.74 +3.0 108,520 - Shewana3_4234 0.75 -0.8 108,546 - Shewana3_4234 0.78 +0.4 108,628 + Shewana3_4234 0.87 +0.0 108,628 + Shewana3_4234 0.87 +1.4 108,629 + Shewana3_4234 0.87 +0.3 108,738 - +0.1 108,818 - Shewana3_4235 0.21 -1.0 108,818 - Shewana3_4235 0.21 +1.6 108,879 - Shewana3_4235 0.47 -0.2 108,924 - Shewana3_4235 0.67 -1.8 108,924 - Shewana3_4235 0.67 +0.2 108,966 - Shewana3_4235 0.85 +0.5 108,987 - +0.8 109,107 + Shewana3_4236 0.14 -0.7 109,293 + Shewana3_4236 0.58 +0.2 109,354 + Shewana3_4236 0.72 +0.1 109,356 + Shewana3_4236 0.72 +0.0 109,356 + Shewana3_4236 0.72 +0.7 109,362 - Shewana3_4236 0.74 -0.6 109,366 + Shewana3_4236 0.75 +0.5 109,375 - Shewana3_4236 0.77 +0.1 109,382 + Shewana3_4236 0.78 +0.2 109,391 + Shewana3_4236 0.80 -0.1 109,391 + Shewana3_4236 0.80 +1.9 109,419 + Shewana3_4236 0.87 -0.6 109,502 - +0.9 109,655 - Shewana3_4237 0.24 +2.5 109,738 + Shewana3_4237 0.51 -0.4 109,738 + Shewana3_4237 0.51 +1.0
Or see this region's nucleotide sequence