Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4215

Experiment: L-Alanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_4214 and Shewana3_4215 are separated by 55 nucleotidesShewana3_4215 and Shewana3_4216 are separated by 68 nucleotidesShewana3_4216 and Shewana3_4217 are separated by 128 nucleotides Shewana3_4214: Shewana3_4214 - hypothetical protein (RefSeq), at 84,628 to 85,533 _4214 Shewana3_4215: Shewana3_4215 - helicase domain-containing protein (RefSeq), at 85,589 to 87,583 _4215 Shewana3_4216: Shewana3_4216 - hypothetical protein (RefSeq), at 87,652 to 88,143 _4216 Shewana3_4217: Shewana3_4217 - putative signal transduction protein (RefSeq), at 88,272 to 88,994 _4217 Position (kb) 85 86 87 88Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 84.761 kb on - strand, within Shewana3_4214at 84.815 kb on - strand, within Shewana3_4214at 84.817 kb on + strand, within Shewana3_4214at 84.835 kb on - strand, within Shewana3_4214at 84.835 kb on - strand, within Shewana3_4214at 85.001 kb on + strand, within Shewana3_4214at 85.009 kb on - strand, within Shewana3_4214at 85.050 kb on + strand, within Shewana3_4214at 85.104 kb on - strand, within Shewana3_4214at 85.104 kb on - strand, within Shewana3_4214at 85.106 kb on + strand, within Shewana3_4214at 85.106 kb on + strand, within Shewana3_4214at 85.114 kb on - strand, within Shewana3_4214at 85.183 kb on + strand, within Shewana3_4214at 85.430 kb on + strand, within Shewana3_4214at 85.438 kb on - strand, within Shewana3_4214at 85.599 kb on - strandat 85.784 kb on - strandat 85.882 kb on + strand, within Shewana3_4215at 85.890 kb on - strand, within Shewana3_4215at 85.892 kb on + strand, within Shewana3_4215at 85.930 kb on - strand, within Shewana3_4215at 86.108 kb on + strand, within Shewana3_4215at 86.225 kb on + strand, within Shewana3_4215at 86.243 kb on - strand, within Shewana3_4215at 86.300 kb on + strand, within Shewana3_4215at 86.338 kb on + strand, within Shewana3_4215at 86.346 kb on - strand, within Shewana3_4215at 86.633 kb on + strand, within Shewana3_4215at 86.747 kb on - strand, within Shewana3_4215at 87.076 kb on + strand, within Shewana3_4215at 87.156 kb on - strand, within Shewana3_4215at 87.222 kb on - strand, within Shewana3_4215at 87.247 kb on - strand, within Shewana3_4215at 87.247 kb on - strand, within Shewana3_4215at 87.255 kb on + strand, within Shewana3_4215at 87.407 kb on + strandat 87.488 kb on + strandat 87.579 kb on + strandat 87.823 kb on + strand, within Shewana3_4216at 87.831 kb on - strand, within Shewana3_4216at 87.886 kb on + strand, within Shewana3_4216at 87.956 kb on - strand, within Shewana3_4216at 88.012 kb on - strand, within Shewana3_4216at 88.050 kb on + strand, within Shewana3_4216at 88.216 kb on - strandat 88.445 kb on + strand, within Shewana3_4217

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
remove
84,761 - Shewana3_4214 0.15 +1.3
84,815 - Shewana3_4214 0.21 +0.2
84,817 + Shewana3_4214 0.21 +0.8
84,835 - Shewana3_4214 0.23 +2.5
84,835 - Shewana3_4214 0.23 -0.3
85,001 + Shewana3_4214 0.41 +1.3
85,009 - Shewana3_4214 0.42 +0.8
85,050 + Shewana3_4214 0.47 +0.4
85,104 - Shewana3_4214 0.53 -2.3
85,104 - Shewana3_4214 0.53 -0.0
85,106 + Shewana3_4214 0.53 -3.5
85,106 + Shewana3_4214 0.53 -1.0
85,114 - Shewana3_4214 0.54 -0.7
85,183 + Shewana3_4214 0.61 -0.6
85,430 + Shewana3_4214 0.89 +0.0
85,438 - Shewana3_4214 0.89 -0.7
85,599 - -0.7
85,784 - -0.0
85,882 + Shewana3_4215 0.15 +0.8
85,890 - Shewana3_4215 0.15 -2.1
85,892 + Shewana3_4215 0.15 +0.1
85,930 - Shewana3_4215 0.17 +0.7
86,108 + Shewana3_4215 0.26 -1.0
86,225 + Shewana3_4215 0.32 +0.1
86,243 - Shewana3_4215 0.33 +0.0
86,300 + Shewana3_4215 0.36 -1.6
86,338 + Shewana3_4215 0.38 +0.7
86,346 - Shewana3_4215 0.38 -1.0
86,633 + Shewana3_4215 0.52 +0.7
86,747 - Shewana3_4215 0.58 -0.0
87,076 + Shewana3_4215 0.75 -1.0
87,156 - Shewana3_4215 0.79 -0.5
87,222 - Shewana3_4215 0.82 +1.4
87,247 - Shewana3_4215 0.83 -0.0
87,247 - Shewana3_4215 0.83 -0.0
87,255 + Shewana3_4215 0.84 -0.5
87,407 + -0.6
87,488 + -0.6
87,579 + -0.1
87,823 + Shewana3_4216 0.35 +0.0
87,831 - Shewana3_4216 0.36 +1.8
87,886 + Shewana3_4216 0.48 -0.4
87,956 - Shewana3_4216 0.62 -0.9
88,012 - Shewana3_4216 0.73 +1.8
88,050 + Shewana3_4216 0.81 +2.0
88,216 - -0.1
88,445 + Shewana3_4217 0.24 +1.2

Or see this region's nucleotide sequence