Experiment: plate grown in LD 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_B2615 and parB are separated by 102 nucleotides parB and parA overlap by 4 nucleotides parA and sepA2 are separated by 133 nucleotides
Synpcc7942_B2615: Synpcc7942_B2615 - hypothetical protein, at 65 to 394
_B2615
Synpcc7942_B2626: parB - hypothetical protein, at 497 to 1,321
parB
Synpcc7942_B2637: parA - ParA-like protein, at 1,318 to 1,929
parA
Synpcc7942_B2648: sepA2 - hypothetical protein, at 2,063 to 2,329
sepA2
Position (kb) 0
1
2 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 0.018 kb on + strand at 0.042 kb on + strand at 0.051 kb on - strand at 0.052 kb on + strand at 0.053 kb on + strand at 0.060 kb on - strand at 0.060 kb on - strand at 0.070 kb on - strand at 0.070 kb on - strand at 0.071 kb on - strand at 0.072 kb on + strand at 0.077 kb on + strand at 0.085 kb on - strand at 0.088 kb on + strand at 0.096 kb on - strand at 0.133 kb on + strand, within Synpcc7942_B2615 at 0.133 kb on + strand, within Synpcc7942_B2615 at 0.133 kb on + strand, within Synpcc7942_B2615 at 0.133 kb on + strand, within Synpcc7942_B2615 at 0.141 kb on - strand, within Synpcc7942_B2615 at 0.141 kb on - strand, within Synpcc7942_B2615 at 0.143 kb on + strand, within Synpcc7942_B2615 at 0.143 kb on + strand, within Synpcc7942_B2615 at 0.143 kb on + strand, within Synpcc7942_B2615 at 0.151 kb on - strand, within Synpcc7942_B2615 at 0.151 kb on - strand, within Synpcc7942_B2615 at 0.151 kb on - strand, within Synpcc7942_B2615 at 0.151 kb on - strand, within Synpcc7942_B2615 at 0.151 kb on - strand, within Synpcc7942_B2615 at 0.158 kb on + strand, within Synpcc7942_B2615 at 0.158 kb on + strand, within Synpcc7942_B2615 at 0.166 kb on - strand, within Synpcc7942_B2615 at 0.207 kb on - strand, within Synpcc7942_B2615 at 0.207 kb on - strand, within Synpcc7942_B2615 at 0.214 kb on + strand, within Synpcc7942_B2615 at 0.221 kb on + strand, within Synpcc7942_B2615 at 0.221 kb on + strand, within Synpcc7942_B2615 at 0.221 kb on + strand, within Synpcc7942_B2615 at 0.229 kb on - strand, within Synpcc7942_B2615 at 0.229 kb on - strand at 0.229 kb on - strand, within Synpcc7942_B2615 at 0.229 kb on - strand, within Synpcc7942_B2615 at 0.229 kb on - strand, within Synpcc7942_B2615 at 0.229 kb on - strand, within Synpcc7942_B2615 at 0.240 kb on + strand, within Synpcc7942_B2615 at 0.247 kb on + strand, within Synpcc7942_B2615 at 0.247 kb on + strand, within Synpcc7942_B2615 at 0.248 kb on - strand, within Synpcc7942_B2615 at 0.255 kb on - strand, within Synpcc7942_B2615 at 0.255 kb on - strand, within Synpcc7942_B2615 at 0.255 kb on - strand, within Synpcc7942_B2615 at 0.255 kb on - strand, within Synpcc7942_B2615 at 0.255 kb on - strand, within Synpcc7942_B2615 at 0.257 kb on + strand, within Synpcc7942_B2615 at 0.257 kb on + strand, within Synpcc7942_B2615 at 0.257 kb on + strand, within Synpcc7942_B2615 at 0.304 kb on - strand, within Synpcc7942_B2615 at 0.322 kb on + strand, within Synpcc7942_B2615 at 0.360 kb on + strand, within Synpcc7942_B2615 at 0.360 kb on + strand, within Synpcc7942_B2615 at 0.360 kb on + strand, within Synpcc7942_B2615 at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.381 kb on - strand at 0.381 kb on - strand at 0.381 kb on - strand at 0.381 kb on - strand at 0.381 kb on - strand at 0.381 kb on - strand at 0.396 kb on + strand at 0.401 kb on + strand at 0.401 kb on + strand at 0.401 kb on + strand at 0.401 kb on + strand at 0.401 kb on + strand at 0.404 kb on - strand at 0.404 kb on - strand at 0.407 kb on - strand at 0.409 kb on - strand at 0.409 kb on - strand at 0.409 kb on - strand at 0.414 kb on - strand at 0.414 kb on - strand at 0.414 kb on - strand at 0.431 kb on + strand at 0.495 kb on + strand at 0.495 kb on + strand at 0.495 kb on + strand at 0.495 kb on + strand at 0.510 kb on + strand at 0.512 kb on + strand at 0.514 kb on + strand at 0.565 kb on - strand at 0.601 kb on - strand, within parB at 0.651 kb on + strand, within parB at 0.680 kb on + strand, within parB at 0.748 kb on + strand, within parB at 0.756 kb on - strand, within parB at 0.855 kb on + strand, within parB at 0.877 kb on - strand, within parB at 1.007 kb on + strand, within parB at 1.192 kb on - strand, within parB at 1.218 kb on + strand, within parB at 1.293 kb on - strand at 1.293 kb on - strand at 1.295 kb on + strand at 1.303 kb on - strand at 1.340 kb on - strand at 1.362 kb on - strand at 1.380 kb on + strand, within parA at 1.380 kb on + strand, within parA at 1.382 kb on - strand, within parA at 1.435 kb on + strand, within parA at 1.473 kb on + strand, within parA at 1.514 kb on + strand, within parA at 1.516 kb on - strand at 1.567 kb on + strand, within parA at 1.573 kb on - strand, within parA at 1.630 kb on + strand, within parA at 1.643 kb on - strand, within parA at 1.657 kb on - strand, within parA at 1.678 kb on - strand, within parA at 1.691 kb on - strand, within parA at 1.710 kb on - strand, within parA at 1.710 kb on - strand at 1.756 kb on + strand, within parA at 1.756 kb on + strand, within parA at 1.761 kb on + strand, within parA at 1.769 kb on - strand, within parA at 1.770 kb on + strand, within parA at 1.771 kb on - strand, within parA at 1.820 kb on + strand, within parA at 1.852 kb on + strand, within parA at 1.852 kb on + strand, within parA at 1.878 kb on + strand at 1.878 kb on + strand at 1.888 kb on + strand at 1.913 kb on + strand at 1.921 kb on - strand at 1.923 kb on + strand at 1.923 kb on + strand at 1.923 kb on + strand at 1.924 kb on + strand at 1.931 kb on - strand at 1.931 kb on - strand at 1.935 kb on + strand at 1.935 kb on + strand at 1.935 kb on + strand at 1.935 kb on + strand at 1.936 kb on + strand at 1.936 kb on + strand at 1.936 kb on + strand at 1.936 kb on + strand at 1.936 kb on + strand at 1.936 kb on + strand at 1.936 kb on + strand at 1.943 kb on - strand at 1.943 kb on - strand at 1.944 kb on - strand at 1.944 kb on - strand at 1.944 kb on - strand at 1.944 kb on - strand at 1.944 kb on - strand at 1.960 kb on + strand at 1.968 kb on - strand at 1.972 kb on + strand at 1.973 kb on + strand at 1.979 kb on + strand at 1.979 kb on + strand at 1.979 kb on + strand at 1.980 kb on - strand at 1.981 kb on - strand at 1.987 kb on - strand at 1.999 kb on + strand at 1.999 kb on + strand at 1.999 kb on + strand at 1.999 kb on + strand at 1.999 kb on + strand at 1.999 kb on + strand at 2.005 kb on - strand at 2.005 kb on - strand at 2.007 kb on - strand at 2.007 kb on - strand at 2.007 kb on - strand at 2.007 kb on - strand at 2.007 kb on - strand at 2.007 kb on - strand at 2.007 kb on - strand at 2.024 kb on + strand at 2.024 kb on + strand at 2.024 kb on + strand at 2.037 kb on + strand at 2.058 kb on - strand at 2.311 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plate grown in LD 12:12 remove 18 + +0.0 42 + +0.4 51 - -1.6 52 + +0.7 53 + -0.3 60 - +1.0 60 - -1.7 70 - +0.3 70 - -0.8 71 - -0.9 72 + -3.1 77 + +0.3 85 - +1.1 88 + -4.2 96 - +0.6 133 + Synpcc7942_B2615 0.21 -0.1 133 + Synpcc7942_B2615 0.21 -2.3 133 + Synpcc7942_B2615 0.21 +0.5 133 + Synpcc7942_B2615 0.21 -4.0 141 - Synpcc7942_B2615 0.23 +1.1 141 - Synpcc7942_B2615 0.23 +0.8 143 + Synpcc7942_B2615 0.24 -1.6 143 + Synpcc7942_B2615 0.24 -2.7 143 + Synpcc7942_B2615 0.24 -0.7 151 - Synpcc7942_B2615 0.26 -0.8 151 - Synpcc7942_B2615 0.26 -0.3 151 - Synpcc7942_B2615 0.26 +0.6 151 - Synpcc7942_B2615 0.26 -0.2 151 - Synpcc7942_B2615 0.26 +1.4 158 + Synpcc7942_B2615 0.28 -1.1 158 + Synpcc7942_B2615 0.28 +1.0 166 - Synpcc7942_B2615 0.31 -1.6 207 - Synpcc7942_B2615 0.43 +0.6 207 - Synpcc7942_B2615 0.43 +0.5 214 + Synpcc7942_B2615 0.45 +0.3 221 + Synpcc7942_B2615 0.47 +1.0 221 + Synpcc7942_B2615 0.47 -2.3 221 + Synpcc7942_B2615 0.47 -2.2 229 - Synpcc7942_B2615 0.50 +1.3 229 - -1.3 229 - Synpcc7942_B2615 0.50 -5.1 229 - Synpcc7942_B2615 0.50 -0.9 229 - Synpcc7942_B2615 0.50 -0.4 229 - Synpcc7942_B2615 0.50 -3.6 240 + Synpcc7942_B2615 0.53 -0.8 247 + Synpcc7942_B2615 0.55 -3.4 247 + Synpcc7942_B2615 0.55 +0.7 248 - Synpcc7942_B2615 0.55 +0.9 255 - Synpcc7942_B2615 0.58 -2.7 255 - Synpcc7942_B2615 0.58 -0.7 255 - Synpcc7942_B2615 0.58 -3.8 255 - Synpcc7942_B2615 0.58 -1.5 255 - Synpcc7942_B2615 0.58 -2.0 257 + Synpcc7942_B2615 0.58 -1.3 257 + Synpcc7942_B2615 0.58 -0.4 257 + Synpcc7942_B2615 0.58 +0.2 304 - Synpcc7942_B2615 0.72 +2.4 322 + Synpcc7942_B2615 0.78 -3.0 360 + Synpcc7942_B2615 0.89 +0.3 360 + Synpcc7942_B2615 0.89 +0.8 360 + Synpcc7942_B2615 0.89 -1.6 373 + -2.4 373 + +1.3 373 + -4.7 373 + -3.6 373 + -0.5 373 + +1.7 373 + -2.7 373 + -0.1 373 + +0.1 373 + +0.2 381 - +0.0 381 - -3.3 381 - +2.0 381 - -1.6 381 - +0.7 381 - +1.3 396 + -3.9 401 + -1.3 401 + -0.0 401 + -0.5 401 + -0.6 401 + -0.8 404 - +1.5 404 - +0.5 407 - +1.9 409 - +1.0 409 - -1.7 409 - -2.3 414 - +2.6 414 - -0.7 414 - +1.7 431 + +0.5 495 + -2.4 495 + -2.3 495 + -1.2 495 + +0.7 510 + -2.0 512 + -1.0 514 + -1.4 565 - -2.6 601 - parB Synpcc7942_B2626 0.13 -3.6 651 + parB Synpcc7942_B2626 0.19 -3.1 680 + parB Synpcc7942_B2626 0.22 -0.8 748 + parB Synpcc7942_B2626 0.30 -2.2 756 - parB Synpcc7942_B2626 0.31 -2.3 855 + parB Synpcc7942_B2626 0.43 -2.4 877 - parB Synpcc7942_B2626 0.46 -3.8 1,007 + parB Synpcc7942_B2626 0.62 -1.3 1,192 - parB Synpcc7942_B2626 0.84 -3.0 1,218 + parB Synpcc7942_B2626 0.87 -3.3 1,293 - -2.4 1,293 - -1.4 1,295 + -2.4 1,303 - +0.1 1,340 - -2.1 1,362 - +1.0 1,380 + parA Synpcc7942_B2637 0.10 -2.3 1,380 + parA Synpcc7942_B2637 0.10 -2.7 1,382 - parA Synpcc7942_B2637 0.10 -3.2 1,435 + parA Synpcc7942_B2637 0.19 -2.7 1,473 + parA Synpcc7942_B2637 0.25 -1.3 1,514 + parA Synpcc7942_B2637 0.32 -3.0 1,516 - -0.8 1,567 + parA Synpcc7942_B2637 0.41 -0.3 1,573 - parA Synpcc7942_B2637 0.42 -2.7 1,630 + parA Synpcc7942_B2637 0.51 -3.7 1,643 - parA Synpcc7942_B2637 0.53 -3.5 1,657 - parA Synpcc7942_B2637 0.55 -2.1 1,678 - parA Synpcc7942_B2637 0.59 -2.8 1,691 - parA Synpcc7942_B2637 0.61 -2.1 1,710 - parA Synpcc7942_B2637 0.64 -2.6 1,710 - -1.6 1,756 + parA Synpcc7942_B2637 0.72 -3.6 1,756 + parA Synpcc7942_B2637 0.72 -2.1 1,761 + parA Synpcc7942_B2637 0.72 -1.3 1,769 - parA Synpcc7942_B2637 0.74 -1.8 1,770 + parA Synpcc7942_B2637 0.74 +0.0 1,771 - parA Synpcc7942_B2637 0.74 -2.1 1,820 + parA Synpcc7942_B2637 0.82 -0.9 1,852 + parA Synpcc7942_B2637 0.87 -0.3 1,852 + parA Synpcc7942_B2637 0.87 -1.3 1,878 + -2.4 1,878 + -0.8 1,888 + -1.6 1,913 + -1.4 1,921 - -2.3 1,923 + +1.2 1,923 + +0.3 1,923 + -0.3 1,924 + +1.1 1,931 - -1.8 1,931 - -0.8 1,935 + -4.0 1,935 + +0.5 1,935 + -0.1 1,935 + -0.6 1,936 + -0.4 1,936 + +0.4 1,936 + +0.2 1,936 + +2.7 1,936 + -2.3 1,936 + -2.6 1,936 + +0.7 1,943 - +0.1 1,943 - -0.4 1,944 - +0.2 1,944 - +2.0 1,944 - -0.0 1,944 - +1.0 1,944 - +0.5 1,960 + +0.8 1,968 - +0.4 1,972 + +0.2 1,973 + +2.9 1,979 + -2.4 1,979 + +1.8 1,979 + -0.8 1,980 - +0.2 1,981 - -0.3 1,987 - -2.1 1,999 + -1.7 1,999 + +0.8 1,999 + +0.1 1,999 + +0.9 1,999 + -3.6 1,999 + +0.3 2,005 - +1.9 2,005 - -0.1 2,007 - -2.6 2,007 - -0.5 2,007 - -1.2 2,007 - +1.7 2,007 - -2.3 2,007 - -0.0 2,007 - +2.6 2,024 + -2.3 2,024 + -1.1 2,024 + -0.4 2,037 + -2.4 2,058 - +0.8 2,311 + -1.8
Or see this region's nucleotide sequence