Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2369

Experiment: plate grown in LD 12:12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plate grown in LD 12:12
2,434,058	-		Synpcc7942_2368	0.15	+0.1
2,434,103	-		Synpcc7942_2368	0.19	-4.5
2,434,151	+		Synpcc7942_2368	0.23	-0.5
2,434,273	-		Synpcc7942_2368	0.34	-1.2
2,434,302	+		Synpcc7942_2368	0.36	-2.9
2,434,326	+		Synpcc7942_2368	0.39	-3.1
2,434,348	+		Synpcc7942_2368	0.40	-2.4
2,434,356	-		Synpcc7942_2368	0.41	-0.1
2,434,367	-		Synpcc7942_2368	0.42	-2.4
2,434,369	+		Synpcc7942_2368	0.42	-0.9
2,434,377	-		Synpcc7942_2368	0.43	-3.5
2,434,377	-		Synpcc7942_2368	0.43	-2.9
2,434,377	-		Synpcc7942_2368	0.43	-2.0
2,434,417	+		Synpcc7942_2368	0.47	-3.0
2,434,425	-		Synpcc7942_2368	0.47	-3.1
2,434,504	+		Synpcc7942_2368	0.54	-2.4
2,434,799	+		Synpcc7942_2368	0.80	-2.0
2,434,799	+		Synpcc7942_2368	0.80	-2.5
2,434,799	+		Synpcc7942_2368	0.80	-0.4
2,434,807	-		Synpcc7942_2368	0.81	-2.4
2,434,807	-		Synpcc7942_2368	0.81	-2.7
2,434,807	-		Synpcc7942_2368	0.81	-2.1
2,434,856	-		Synpcc7942_2368	0.85	+1.2
2,434,925	+				-3.1
2,434,933	-				-2.8
2,434,986	+				-1.9
2,435,033	-				+0.5
2,435,080	+				-3.6
2,435,161	+				-1.1
2,435,194	+				-2.0
2,435,272	-				+1.2
2,435,353	-				-4.0
2,435,411	-	acrF	Synpcc7942_2369	0.12	-2.3
2,435,411	-	acrF	Synpcc7942_2369	0.12	-2.0
2,435,426	+	acrF	Synpcc7942_2369	0.12	-2.0
2,435,525	-	acrF	Synpcc7942_2369	0.15	-2.7
2,435,666	+	acrF	Synpcc7942_2369	0.20	-2.9
2,435,778	-	acrF	Synpcc7942_2369	0.23	-1.6
2,435,828	+	acrF	Synpcc7942_2369	0.25	-3.4
2,435,841	+	acrF	Synpcc7942_2369	0.25	-2.8
2,435,849	-	acrF	Synpcc7942_2369	0.25	-2.4
2,435,872	+	acrF	Synpcc7942_2369	0.26	-2.1
2,435,880	-	acrF	Synpcc7942_2369	0.26	-1.2
2,435,954	+	acrF	Synpcc7942_2369	0.29	-2.3
2,435,960	-	acrF	Synpcc7942_2369	0.29	-2.4
2,435,983	-	acrF	Synpcc7942_2369	0.30	-1.0
2,436,014	-	acrF	Synpcc7942_2369	0.31	-3.1
2,436,024	+	acrF	Synpcc7942_2369	0.31	-1.7
2,436,151	-	acrF	Synpcc7942_2369	0.35	-2.5
2,436,253	+	acrF	Synpcc7942_2369	0.38	-3.8
2,436,314	+	acrF	Synpcc7942_2369	0.40	-3.0
2,436,359	+	acrF	Synpcc7942_2369	0.42	-2.8
2,436,479	+	acrF	Synpcc7942_2369	0.45	-3.3
2,436,516	+	acrF	Synpcc7942_2369	0.47	-3.2
2,436,575	-	acrF	Synpcc7942_2369	0.48	-3.0
2,436,594	+	acrF	Synpcc7942_2369	0.49	-1.7
2,436,594	+	acrF	Synpcc7942_2369	0.49	-1.4
2,436,630	+	acrF	Synpcc7942_2369	0.50	-1.2
2,436,630	+	acrF	Synpcc7942_2369	0.50	-0.6
2,436,632	-	acrF	Synpcc7942_2369	0.50	-3.6
2,436,893	+	acrF	Synpcc7942_2369	0.58	-3.2
2,436,893	+	acrF	Synpcc7942_2369	0.58	-3.1
2,436,933	+				-0.7
2,436,939	+	acrF	Synpcc7942_2369	0.60	-2.1
2,436,941	-	acrF	Synpcc7942_2369	0.60	-3.2
2,436,947	-	acrF	Synpcc7942_2369	0.60	-0.8
2,436,947	-	acrF	Synpcc7942_2369	0.60	-3.0
2,436,947	-	acrF	Synpcc7942_2369	0.60	-0.6
2,437,005	-	acrF	Synpcc7942_2369	0.62	-1.7
2,437,040	-	acrF	Synpcc7942_2369	0.63	-1.2
2,437,050	-	acrF	Synpcc7942_2369	0.63	-1.8
2,437,050	-	acrF	Synpcc7942_2369	0.63	-2.1
2,437,110	-	acrF	Synpcc7942_2369	0.65	-3.1
2,437,196	+	acrF	Synpcc7942_2369	0.68	-3.0
2,437,196	+	acrF	Synpcc7942_2369	0.68	-1.7
2,437,269	-	acrF	Synpcc7942_2369	0.70	-2.3
2,437,288	+	acrF	Synpcc7942_2369	0.71	-3.6
2,437,296	-	acrF	Synpcc7942_2369	0.71	-1.8
2,437,296	-	acrF	Synpcc7942_2369	0.71	-1.3
2,437,302	-	acrF	Synpcc7942_2369	0.71	-2.6
2,437,368	-	acrF	Synpcc7942_2369	0.73	-2.6
2,437,405	-	acrF	Synpcc7942_2369	0.75	-0.8
2,437,487	-	acrF	Synpcc7942_2369	0.77	-3.0
2,437,499	-	acrF	Synpcc7942_2369	0.78	-1.9
2,437,499	-	acrF	Synpcc7942_2369	0.78	-1.9
2,437,564	-	acrF	Synpcc7942_2369	0.80	+1.8
2,437,564	-	acrF	Synpcc7942_2369	0.80	-2.3
2,437,624	+	acrF	Synpcc7942_2369	0.81	-1.8
2,437,672	+	acrF	Synpcc7942_2369	0.83	-1.6
2,437,681	-	acrF	Synpcc7942_2369	0.83	-1.8
2,437,796	+	acrF	Synpcc7942_2369	0.87	-2.6
2,437,826	+	acrF	Synpcc7942_2369	0.88	-3.6
2,437,834	-	acrF	Synpcc7942_2369	0.88	-2.9
2,437,841	+	acrF	Synpcc7942_2369	0.88	-1.9
2,437,917	-				-2.5
2,437,923	+				-1.9
2,437,923	+				-1.6
2,437,925	-				-2.1
2,437,926	-				-0.9
2,437,967	+				-1.9
2,438,023	+				-3.8
2,438,103	-				-1.1
2,438,139	+				-3.2
2,438,178	+				-2.3
2,438,254	+		Synpcc7942_2370	0.10	-2.5
2,438,259	+		Synpcc7942_2370	0.13	-1.7
2,438,316	+		Synpcc7942_2370	0.40	-0.7
2,438,322	+		Synpcc7942_2370	0.43	+0.4
2,438,348	+		Synpcc7942_2370	0.55	-0.8
2,438,364	+		Synpcc7942_2370	0.63	-1.1
2,438,377	-		Synpcc7942_2370	0.69	+0.6
2,438,377	-		Synpcc7942_2370	0.69	+0.7
2,438,381	+		Synpcc7942_2370	0.71	+0.8
2,438,399	-		Synpcc7942_2370	0.80	+1.3
2,438,400	-		Synpcc7942_2370	0.80	+0.2
2,438,424	+				+0.4
2,438,449	+				+1.6
2,438,515	+				-3.7
2,438,627	-	lpxA	Synpcc7942_2371	0.22	-2.9
2,438,696	+	lpxA	Synpcc7942_2371	0.31	-0.4
2,439,055	+	lpxA	Synpcc7942_2371	0.76	-4.8
2,439,160	+	lpxA	Synpcc7942_2371	0.89	-4.2