Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2239

Experiment: plate grown in LD 12:12

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plate grown in LD 12:12
2,304,330	+	glcP	Synpcc7942_2238	0.50	+1.0
2,304,339	-	glcP	Synpcc7942_2238	0.50	+0.1
2,304,492	+	glcP	Synpcc7942_2238	0.61	-3.6
2,304,525	+	glcP	Synpcc7942_2238	0.63	-0.4
2,304,571	+	glcP	Synpcc7942_2238	0.67	+0.7
2,304,579	+	glcP	Synpcc7942_2238	0.67	+0.0
2,304,861	-	glcP	Synpcc7942_2238	0.87	+1.2
2,304,935	+				+1.0
2,304,972	+				+2.1
2,304,972	+				-0.7
2,304,972	+				+1.5
2,304,972	+				-1.7
2,304,974	+				-0.1
2,305,020	-				+1.7
2,305,039	+				+0.1
2,305,073	-				-0.6
2,305,111	-				+0.9
2,305,303	+				-3.4
2,305,306	-				+0.2
2,305,395	-		Synpcc7942_2239	0.23	-3.5
2,305,402	+		Synpcc7942_2239	0.24	-4.6
2,305,424	+		Synpcc7942_2239	0.29	-1.3
2,305,426	+		Synpcc7942_2239	0.29	-3.3
2,305,426	+		Synpcc7942_2239	0.29	-1.4
2,305,432	-		Synpcc7942_2239	0.30	-3.5
2,305,432	-		Synpcc7942_2239	0.30	-2.8
2,305,442	-		Synpcc7942_2239	0.32	-3.8
2,305,475	-		Synpcc7942_2239	0.39	-3.1
2,305,512	-		Synpcc7942_2239	0.46	-3.7
2,305,528	+		Synpcc7942_2239	0.49	-1.9
2,305,534	-		Synpcc7942_2239	0.50	-4.0
2,305,561	+		Synpcc7942_2239	0.55	-5.2
2,305,662	-		Synpcc7942_2239	0.75	-5.5
2,305,708	-		Synpcc7942_2239	0.84	-4.9
2,305,710	-		Synpcc7942_2239	0.84	-4.5
2,305,710	-		Synpcc7942_2239	0.84	-4.4
2,305,722	+		Synpcc7942_2239	0.86	-3.4
2,305,732	-		Synpcc7942_2239	0.88	-3.6
2,305,802	+				-0.5
2,305,802	+				-2.1
2,305,802	+				-1.9
2,305,802	+				-1.3
2,305,802	+				-3.3
2,305,802	+				-2.6
2,305,802	+				-1.9
2,305,802	+				-2.1
2,305,810	-				-2.3
2,305,810	-				-2.8
2,305,810	-				+0.2
2,305,810	-				-3.0
2,305,810	-				-2.3
2,305,810	-				-1.2
2,305,886	+				+0.8
2,305,886	+				-0.7
2,305,894	-				-0.0
2,305,895	-				-0.1
2,305,921	+				-1.1
2,306,383	+	ycf52	Synpcc7942_2240	0.79	+1.0
2,306,395	+	ycf52	Synpcc7942_2240	0.82	-0.0
2,306,400	+	ycf52	Synpcc7942_2240	0.83	-0.8
2,306,400	+	ycf52	Synpcc7942_2240	0.83	+0.1
2,306,428	-	ycf52	Synpcc7942_2240	0.88	+0.1
2,306,439	+				+0.7
2,306,447	-				-0.5
2,306,485	+				+0.0
2,306,493	-				+1.2
2,306,510	+				+0.2
2,306,536	+				-2.4
2,306,536	+				+0.2
2,306,536	+				+1.4
2,306,536	+				+0.1
2,306,536	+				+0.1
2,306,536	+				+0.7
2,306,536	+				+2.4
2,306,544	-				-0.2
2,306,544	-				+0.5
2,306,544	-				+1.9
2,306,544	-				-1.2
2,306,544	-				+1.0
2,306,551	-				+0.7
2,306,578	-				+0.6
2,306,595	+				+1.1
2,306,595	+				-0.7
2,306,657	-		Synpcc7942_2241	0.13	-0.5
2,306,657	-		Synpcc7942_2241	0.13	-1.1
2,306,657	-		Synpcc7942_2241	0.13	+0.5
2,306,694	+		Synpcc7942_2241	0.17	+0.3
2,306,702	-		Synpcc7942_2241	0.18	+1.9
2,306,713	-		Synpcc7942_2241	0.19	-3.1
2,306,717	+		Synpcc7942_2241	0.20	+0.2
2,306,743	-		Synpcc7942_2241	0.23	+1.5
2,306,773	-		Synpcc7942_2241	0.26	+0.1
2,306,777	+		Synpcc7942_2241	0.26	+0.0
2,306,777	+		Synpcc7942_2241	0.26	-2.3