Experiment: plate grown in LD 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt natC and Synpcc7942_1895 are separated by 170 nucleotides Synpcc7942_1895 and argJ are separated by 71 nucleotides
Synpcc7942_1894: natC - integral membrane protein of the ABC-type Nat permease for neutral amino acids, at 1,966,520 to 1,967,599
natC
Synpcc7942_1895: Synpcc7942_1895 - hypothetical protein, at 1,967,770 to 1,968,582
_1895
Synpcc7942_1896: argJ - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein, at 1,968,654 to 1,969,898
argJ
Position (kb) 1967
1968
1969 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1966.786 kb on + strand at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.823 kb on - strand, within natC at 1966.823 kb on - strand, within natC at 1966.823 kb on - strand, within natC at 1966.823 kb on - strand, within natC at 1966.823 kb on - strand, within natC at 1966.823 kb on - strand, within natC at 1966.823 kb on - strand, within natC at 1966.828 kb on - strand, within natC at 1966.850 kb on + strand, within natC at 1966.855 kb on + strand, within natC at 1966.858 kb on - strand, within natC at 1966.862 kb on + strand, within natC at 1966.863 kb on - strand at 1966.870 kb on - strand, within natC at 1966.872 kb on + strand, within natC at 1966.872 kb on + strand, within natC at 1966.880 kb on - strand, within natC at 1966.880 kb on - strand, within natC at 1966.885 kb on - strand, within natC at 1966.906 kb on + strand, within natC at 1966.943 kb on + strand, within natC at 1967.012 kb on + strand, within natC at 1967.049 kb on + strand, within natC at 1967.050 kb on + strand at 1967.051 kb on + strand, within natC at 1967.087 kb on + strand, within natC at 1967.092 kb on - strand, within natC at 1967.092 kb on - strand, within natC at 1967.095 kb on - strand, within natC at 1967.095 kb on - strand, within natC at 1967.117 kb on + strand, within natC at 1967.140 kb on - strand, within natC at 1967.152 kb on + strand, within natC at 1967.170 kb on - strand, within natC at 1967.180 kb on - strand, within natC at 1967.193 kb on - strand, within natC at 1967.197 kb on + strand, within natC at 1967.221 kb on + strand, within natC at 1967.223 kb on + strand, within natC at 1967.229 kb on - strand, within natC at 1967.231 kb on - strand, within natC at 1967.273 kb on + strand, within natC at 1967.316 kb on - strand, within natC at 1967.316 kb on - strand, within natC at 1967.320 kb on + strand, within natC at 1967.364 kb on - strand, within natC at 1967.366 kb on + strand, within natC at 1967.384 kb on + strand, within natC at 1967.384 kb on + strand, within natC at 1967.392 kb on - strand, within natC at 1967.441 kb on - strand, within natC at 1967.441 kb on - strand at 1967.441 kb on - strand, within natC at 1967.463 kb on - strand, within natC at 1967.463 kb on - strand, within natC at 1967.469 kb on + strand, within natC at 1967.471 kb on - strand, within natC at 1967.477 kb on - strand, within natC at 1967.477 kb on - strand, within natC at 1967.512 kb on + strand at 1967.514 kb on + strand at 1967.514 kb on + strand at 1967.515 kb on + strand at 1967.525 kb on + strand at 1967.536 kb on + strand at 1967.536 kb on + strand at 1967.541 kb on + strand at 1967.541 kb on + strand at 1967.541 kb on + strand at 1967.541 kb on + strand at 1967.541 kb on + strand at 1967.544 kb on - strand at 1967.544 kb on - strand at 1967.546 kb on + strand at 1967.546 kb on + strand at 1967.546 kb on + strand at 1967.546 kb on + strand at 1967.549 kb on - strand at 1967.549 kb on - strand at 1967.549 kb on - strand at 1967.549 kb on - strand at 1967.549 kb on - strand at 1967.549 kb on - strand at 1967.549 kb on - strand at 1967.576 kb on - strand at 1967.581 kb on + strand at 1967.581 kb on + strand at 1967.581 kb on - strand at 1967.585 kb on + strand at 1967.632 kb on + strand at 1967.633 kb on - strand at 1967.637 kb on + strand at 1967.645 kb on - strand at 1967.659 kb on - strand at 1967.678 kb on + strand at 1967.678 kb on + strand at 1967.706 kb on - strand at 1967.804 kb on + strand at 1967.821 kb on + strand at 1967.824 kb on - strand at 1967.830 kb on - strand at 1967.865 kb on + strand, within Synpcc7942_1895 at 1967.865 kb on + strand, within Synpcc7942_1895 at 1967.870 kb on + strand, within Synpcc7942_1895 at 1967.870 kb on + strand, within Synpcc7942_1895 at 1967.873 kb on + strand, within Synpcc7942_1895 at 1967.873 kb on + strand, within Synpcc7942_1895 at 1967.875 kb on + strand, within Synpcc7942_1895 at 1967.878 kb on - strand, within Synpcc7942_1895 at 1967.878 kb on - strand, within Synpcc7942_1895 at 1967.919 kb on + strand, within Synpcc7942_1895 at 1967.991 kb on - strand, within Synpcc7942_1895 at 1967.999 kb on - strand, within Synpcc7942_1895 at 1968.001 kb on + strand, within Synpcc7942_1895 at 1968.005 kb on + strand, within Synpcc7942_1895 at 1968.009 kb on - strand, within Synpcc7942_1895 at 1968.034 kb on - strand, within Synpcc7942_1895 at 1968.049 kb on - strand, within Synpcc7942_1895 at 1968.054 kb on - strand, within Synpcc7942_1895 at 1968.078 kb on - strand, within Synpcc7942_1895 at 1968.083 kb on - strand, within Synpcc7942_1895 at 1968.145 kb on + strand, within Synpcc7942_1895 at 1968.145 kb on + strand, within Synpcc7942_1895 at 1968.153 kb on - strand, within Synpcc7942_1895 at 1968.189 kb on + strand, within Synpcc7942_1895 at 1968.200 kb on + strand, within Synpcc7942_1895 at 1968.200 kb on + strand, within Synpcc7942_1895 at 1968.208 kb on - strand, within Synpcc7942_1895 at 1968.208 kb on - strand, within Synpcc7942_1895 at 1968.219 kb on + strand, within Synpcc7942_1895 at 1968.291 kb on + strand, within Synpcc7942_1895 at 1968.294 kb on - strand, within Synpcc7942_1895 at 1968.294 kb on - strand, within Synpcc7942_1895 at 1968.299 kb on - strand, within Synpcc7942_1895 at 1968.301 kb on + strand, within Synpcc7942_1895 at 1968.302 kb on + strand, within Synpcc7942_1895 at 1968.306 kb on + strand, within Synpcc7942_1895 at 1968.309 kb on - strand, within Synpcc7942_1895 at 1968.310 kb on - strand, within Synpcc7942_1895 at 1968.310 kb on - strand, within Synpcc7942_1895 at 1968.364 kb on + strand, within Synpcc7942_1895 at 1968.413 kb on + strand, within Synpcc7942_1895 at 1968.482 kb on - strand, within Synpcc7942_1895 at 1968.482 kb on - strand, within Synpcc7942_1895 at 1968.484 kb on + strand, within Synpcc7942_1895 at 1968.493 kb on - strand, within Synpcc7942_1895 at 1968.524 kb on - strand at 1968.528 kb on + strand at 1968.548 kb on + strand at 1968.548 kb on + strand at 1968.549 kb on - strand at 1968.561 kb on + strand at 1968.589 kb on - strand at 1968.589 kb on - strand at 1968.595 kb on + strand at 1968.597 kb on + strand at 1968.603 kb on - strand at 1968.605 kb on - strand at 1968.607 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plate grown in LD 12:12 remove 1,966,786 + +0.1 1,966,815 + natC Synpcc7942_1894 0.27 -0.4 1,966,815 + natC Synpcc7942_1894 0.27 -1.7 1,966,815 + natC Synpcc7942_1894 0.27 +2.0 1,966,815 + natC Synpcc7942_1894 0.27 -1.9 1,966,815 + natC Synpcc7942_1894 0.27 -0.2 1,966,815 + natC Synpcc7942_1894 0.27 +0.9 1,966,815 + natC Synpcc7942_1894 0.27 +2.0 1,966,815 + natC Synpcc7942_1894 0.27 +1.3 1,966,815 + natC Synpcc7942_1894 0.27 -0.3 1,966,815 + natC Synpcc7942_1894 0.27 +1.0 1,966,815 + natC Synpcc7942_1894 0.27 +0.6 1,966,815 + natC Synpcc7942_1894 0.27 -2.1 1,966,823 - natC Synpcc7942_1894 0.28 +0.6 1,966,823 - natC Synpcc7942_1894 0.28 +1.0 1,966,823 - natC Synpcc7942_1894 0.28 +1.0 1,966,823 - natC Synpcc7942_1894 0.28 +0.7 1,966,823 - natC Synpcc7942_1894 0.28 -0.2 1,966,823 - natC Synpcc7942_1894 0.28 +1.5 1,966,823 - natC Synpcc7942_1894 0.28 -4.4 1,966,828 - natC Synpcc7942_1894 0.29 -0.4 1,966,850 + natC Synpcc7942_1894 0.31 +0.3 1,966,855 + natC Synpcc7942_1894 0.31 +0.1 1,966,858 - natC Synpcc7942_1894 0.31 -0.1 1,966,862 + natC Synpcc7942_1894 0.32 +0.2 1,966,863 - -2.2 1,966,870 - natC Synpcc7942_1894 0.32 -0.2 1,966,872 + natC Synpcc7942_1894 0.33 -1.6 1,966,872 + natC Synpcc7942_1894 0.33 +0.8 1,966,880 - natC Synpcc7942_1894 0.33 +1.1 1,966,880 - natC Synpcc7942_1894 0.33 -0.6 1,966,885 - natC Synpcc7942_1894 0.34 -1.1 1,966,906 + natC Synpcc7942_1894 0.36 -1.2 1,966,943 + natC Synpcc7942_1894 0.39 +0.8 1,967,012 + natC Synpcc7942_1894 0.46 +1.3 1,967,049 + natC Synpcc7942_1894 0.49 +0.1 1,967,050 + +2.8 1,967,051 + natC Synpcc7942_1894 0.49 -3.1 1,967,087 + natC Synpcc7942_1894 0.53 +0.8 1,967,092 - natC Synpcc7942_1894 0.53 +1.0 1,967,092 - natC Synpcc7942_1894 0.53 +0.4 1,967,095 - natC Synpcc7942_1894 0.53 -0.1 1,967,095 - natC Synpcc7942_1894 0.53 -1.0 1,967,117 + natC Synpcc7942_1894 0.55 +2.7 1,967,140 - natC Synpcc7942_1894 0.57 +0.4 1,967,152 + natC Synpcc7942_1894 0.59 -0.3 1,967,170 - natC Synpcc7942_1894 0.60 +1.6 1,967,180 - natC Synpcc7942_1894 0.61 +0.3 1,967,193 - natC Synpcc7942_1894 0.62 +0.4 1,967,197 + natC Synpcc7942_1894 0.63 -0.2 1,967,221 + natC Synpcc7942_1894 0.65 +0.7 1,967,223 + natC Synpcc7942_1894 0.65 +1.5 1,967,229 - natC Synpcc7942_1894 0.66 -1.2 1,967,231 - natC Synpcc7942_1894 0.66 +0.4 1,967,273 + natC Synpcc7942_1894 0.70 -0.7 1,967,316 - natC Synpcc7942_1894 0.74 +0.3 1,967,316 - natC Synpcc7942_1894 0.74 +1.3 1,967,320 + natC Synpcc7942_1894 0.74 -0.8 1,967,364 - natC Synpcc7942_1894 0.78 -0.0 1,967,366 + natC Synpcc7942_1894 0.78 -0.9 1,967,384 + natC Synpcc7942_1894 0.80 +0.6 1,967,384 + natC Synpcc7942_1894 0.80 -0.4 1,967,392 - natC Synpcc7942_1894 0.81 -0.2 1,967,441 - natC Synpcc7942_1894 0.85 +1.2 1,967,441 - -1.9 1,967,441 - natC Synpcc7942_1894 0.85 +0.8 1,967,463 - natC Synpcc7942_1894 0.87 -0.9 1,967,463 - natC Synpcc7942_1894 0.87 +0.3 1,967,469 + natC Synpcc7942_1894 0.88 -3.4 1,967,471 - natC Synpcc7942_1894 0.88 +0.8 1,967,477 - natC Synpcc7942_1894 0.89 +0.3 1,967,477 - natC Synpcc7942_1894 0.89 -0.0 1,967,512 + +0.4 1,967,514 + +0.8 1,967,514 + +1.7 1,967,515 + +1.0 1,967,525 + +0.5 1,967,536 + -0.4 1,967,536 + -2.2 1,967,541 + -1.7 1,967,541 + -1.0 1,967,541 + +0.3 1,967,541 + -1.0 1,967,541 + +0.9 1,967,544 - +0.9 1,967,544 - +0.1 1,967,546 + +0.3 1,967,546 + -1.0 1,967,546 + +0.1 1,967,546 + -0.2 1,967,549 - +0.7 1,967,549 - +1.0 1,967,549 - +0.6 1,967,549 - -1.9 1,967,549 - +0.9 1,967,549 - +1.3 1,967,549 - +0.3 1,967,576 - +0.7 1,967,581 + -0.1 1,967,581 + -1.2 1,967,581 - -1.4 1,967,585 + -2.1 1,967,632 + +0.1 1,967,633 - +1.2 1,967,637 + +1.9 1,967,645 - +1.0 1,967,659 - -4.2 1,967,678 + -0.8 1,967,678 + +1.1 1,967,706 - -2.4 1,967,804 + -1.1 1,967,821 + -0.8 1,967,824 - -0.5 1,967,830 - +0.0 1,967,865 + Synpcc7942_1895 0.12 -1.4 1,967,865 + Synpcc7942_1895 0.12 -1.1 1,967,870 + Synpcc7942_1895 0.12 -1.2 1,967,870 + Synpcc7942_1895 0.12 -1.4 1,967,873 + Synpcc7942_1895 0.13 -1.0 1,967,873 + Synpcc7942_1895 0.13 +1.3 1,967,875 + Synpcc7942_1895 0.13 -1.3 1,967,878 - Synpcc7942_1895 0.13 -0.9 1,967,878 - Synpcc7942_1895 0.13 -1.0 1,967,919 + Synpcc7942_1895 0.18 -1.4 1,967,991 - Synpcc7942_1895 0.27 -0.4 1,967,999 - Synpcc7942_1895 0.28 -0.9 1,968,001 + Synpcc7942_1895 0.28 -1.0 1,968,005 + Synpcc7942_1895 0.29 -0.9 1,968,009 - Synpcc7942_1895 0.29 -1.4 1,968,034 - Synpcc7942_1895 0.32 -1.9 1,968,049 - Synpcc7942_1895 0.34 -2.2 1,968,054 - Synpcc7942_1895 0.35 -0.8 1,968,078 - Synpcc7942_1895 0.38 -0.6 1,968,083 - Synpcc7942_1895 0.38 -1.0 1,968,145 + Synpcc7942_1895 0.46 -1.2 1,968,145 + Synpcc7942_1895 0.46 -2.5 1,968,153 - Synpcc7942_1895 0.47 -2.1 1,968,189 + Synpcc7942_1895 0.52 -0.6 1,968,200 + Synpcc7942_1895 0.53 -0.1 1,968,200 + Synpcc7942_1895 0.53 -2.2 1,968,208 - Synpcc7942_1895 0.54 -0.6 1,968,208 - Synpcc7942_1895 0.54 -1.1 1,968,219 + Synpcc7942_1895 0.55 -0.9 1,968,291 + Synpcc7942_1895 0.64 -0.8 1,968,294 - Synpcc7942_1895 0.64 -2.4 1,968,294 - Synpcc7942_1895 0.64 -0.7 1,968,299 - Synpcc7942_1895 0.65 -0.9 1,968,301 + Synpcc7942_1895 0.65 -1.3 1,968,302 + Synpcc7942_1895 0.65 -3.7 1,968,306 + Synpcc7942_1895 0.66 -2.2 1,968,309 - Synpcc7942_1895 0.66 -0.9 1,968,310 - Synpcc7942_1895 0.66 -1.3 1,968,310 - Synpcc7942_1895 0.66 -1.0 1,968,364 + Synpcc7942_1895 0.73 -0.5 1,968,413 + Synpcc7942_1895 0.79 -1.6 1,968,482 - Synpcc7942_1895 0.88 -0.4 1,968,482 - Synpcc7942_1895 0.88 -1.8 1,968,484 + Synpcc7942_1895 0.88 -1.1 1,968,493 - Synpcc7942_1895 0.89 +0.1 1,968,524 - -0.7 1,968,528 + -0.6 1,968,548 + -0.5 1,968,548 + +0.2 1,968,549 - +0.3 1,968,561 + +0.8 1,968,589 - +2.5 1,968,589 - +1.8 1,968,595 + +0.2 1,968,597 + -0.2 1,968,603 - +0.9 1,968,605 - +0.0 1,968,607 + +0.8
Or see this region's nucleotide sequence