Experiment: plate grown in LD 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1613 and rpmH are separated by 47 nucleotides rpmH and rnpA are separated by 5 nucleotides rnpA and Synpcc7942_1616 overlap by 14 nucleotides Synpcc7942_1616 and yidC are separated by 202 nucleotides
Synpcc7942_1613: Synpcc7942_1613 - hypothetical protein, at 1,682,042 to 1,682,617
_1613
Synpcc7942_1614: rpmH - 50S ribosomal protein L34, at 1,682,665 to 1,682,802
rpmH
Synpcc7942_1615: rnpA - ribonuclease P, at 1,682,808 to 1,683,176
rnpA
Synpcc7942_1616: Synpcc7942_1616 - hypothetical protein, at 1,683,163 to 1,683,549
_1616
Synpcc7942_1617: yidC - putative inner membrane protein translocase component YidC, at 1,683,752 to 1,684,930
yidC
Position (kb) 1683
1684 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1682.805 kb on - strand at 1683.190 kb on - strand at 1683.201 kb on + strand at 1683.209 kb on - strand, within Synpcc7942_1616 at 1683.258 kb on - strand, within Synpcc7942_1616 at 1683.263 kb on - strand, within Synpcc7942_1616 at 1683.573 kb on + strand at 1683.581 kb on - strand at 1683.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plate grown in LD 12:12 remove 1,682,805 - -0.9 1,683,190 - -3.5 1,683,201 + +0.4 1,683,209 - Synpcc7942_1616 0.12 -1.1 1,683,258 - Synpcc7942_1616 0.25 -0.2 1,683,263 - Synpcc7942_1616 0.26 -1.4 1,683,573 + -2.1 1,683,581 - -0.1 1,683,581 - +0.0
Or see this region's nucleotide sequence