Experiment: plate grown in LD 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mntC and mntA are separated by 58 nucleotides mntA and mntB are separated by 6 nucleotides mntB and Synpcc7942_1319 are separated by 65 nucleotides Synpcc7942_1319 and Synpcc7942_1320 overlap by 34 nucleotides
Synpcc7942_1316: mntC - Mn transporter MntC, at 1,346,077 to 1,347,114
mntC
Synpcc7942_1317: mntA - ATPase, at 1,347,173 to 1,347,910
mntA
Synpcc7942_1318: mntB - manganese transport system membrane protein MntB, at 1,347,917 to 1,348,768
mntB
Synpcc7942_1319: Synpcc7942_1319 - pyrimidine regulatory protein PyrR, at 1,348,834 to 1,349,373
_1319
Synpcc7942_1320: Synpcc7942_1320 - hypothetical protein, at 1,349,340 to 1,350,296
_1320
Position (kb) 1347
1348
1349 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 1346.943 kb on - strand, within mntC at 1346.948 kb on - strand, within mntC at 1346.975 kb on + strand, within mntC at 1346.982 kb on + strand, within mntC at 1346.988 kb on - strand, within mntC at 1346.990 kb on + strand, within mntC at 1346.990 kb on + strand at 1346.998 kb on - strand, within mntC at 1347.002 kb on + strand, within mntC at 1347.002 kb on + strand, within mntC at 1347.002 kb on + strand, within mntC at 1347.002 kb on + strand, within mntC at 1347.010 kb on - strand, within mntC at 1347.010 kb on - strand, within mntC at 1347.010 kb on - strand, within mntC at 1347.010 kb on - strand at 1347.010 kb on - strand, within mntC at 1347.010 kb on - strand, within mntC at 1347.020 kb on - strand at 1347.020 kb on - strand at 1347.038 kb on + strand at 1347.044 kb on + strand at 1347.044 kb on - strand at 1347.062 kb on + strand at 1347.075 kb on - strand at 1347.075 kb on - strand at 1347.075 kb on - strand at 1347.080 kb on + strand at 1347.091 kb on + strand at 1347.103 kb on - strand at 1347.117 kb on + strand at 1347.125 kb on - strand at 1347.125 kb on - strand at 1347.125 kb on - strand at 1347.127 kb on + strand at 1347.190 kb on - strand at 1347.250 kb on - strand, within mntA at 1347.263 kb on + strand, within mntA at 1347.263 kb on + strand, within mntA at 1347.277 kb on + strand, within mntA at 1347.311 kb on + strand, within mntA at 1347.311 kb on + strand, within mntA at 1347.319 kb on - strand, within mntA at 1347.319 kb on - strand, within mntA at 1347.322 kb on + strand, within mntA at 1347.344 kb on + strand, within mntA at 1347.354 kb on - strand, within mntA at 1347.379 kb on + strand, within mntA at 1347.379 kb on + strand, within mntA at 1347.398 kb on - strand, within mntA at 1347.424 kb on - strand, within mntA at 1347.571 kb on + strand, within mntA at 1347.579 kb on - strand, within mntA at 1347.654 kb on - strand, within mntA at 1347.748 kb on + strand, within mntA at 1347.758 kb on + strand, within mntA at 1347.768 kb on + strand, within mntA at 1347.852 kb on + strand at 1347.852 kb on + strand at 1347.852 kb on + strand at 1347.852 kb on + strand at 1347.852 kb on + strand at 1347.860 kb on - strand at 1347.860 kb on - strand at 1347.860 kb on - strand at 1347.876 kb on - strand at 1347.882 kb on - strand at 1347.926 kb on - strand at 1347.949 kb on - strand at 1347.974 kb on - strand at 1348.055 kb on + strand, within mntB at 1348.070 kb on - strand, within mntB at 1348.112 kb on - strand, within mntB at 1348.118 kb on - strand, within mntB at 1348.154 kb on - strand, within mntB at 1348.177 kb on + strand, within mntB at 1348.188 kb on + strand, within mntB at 1348.251 kb on - strand, within mntB at 1348.340 kb on - strand, within mntB at 1348.352 kb on - strand, within mntB at 1348.368 kb on - strand, within mntB at 1348.390 kb on + strand, within mntB at 1348.398 kb on - strand, within mntB at 1348.413 kb on + strand, within mntB at 1348.433 kb on + strand, within mntB at 1348.448 kb on + strand, within mntB at 1348.471 kb on - strand, within mntB at 1348.518 kb on + strand, within mntB at 1348.548 kb on - strand, within mntB at 1348.549 kb on + strand, within mntB at 1348.554 kb on + strand, within mntB at 1348.554 kb on + strand, within mntB at 1348.568 kb on + strand, within mntB at 1348.573 kb on + strand, within mntB at 1348.581 kb on - strand, within mntB at 1348.586 kb on + strand, within mntB at 1348.601 kb on - strand, within mntB at 1348.617 kb on - strand, within mntB at 1348.620 kb on + strand, within mntB at 1348.644 kb on + strand, within mntB at 1348.652 kb on - strand, within mntB at 1348.673 kb on + strand, within mntB at 1348.678 kb on + strand, within mntB at 1348.738 kb on - strand at 1348.741 kb on + strand at 1348.764 kb on + strand at 1348.780 kb on - strand at 1348.794 kb on + strand at 1348.796 kb on - strand at 1348.840 kb on - strand at 1348.890 kb on - strand, within Synpcc7942_1319 at 1348.972 kb on - strand, within Synpcc7942_1319 at 1348.982 kb on - strand, within Synpcc7942_1319 at 1348.987 kb on + strand, within Synpcc7942_1319 at 1349.002 kb on - strand, within Synpcc7942_1319 at 1349.004 kb on + strand, within Synpcc7942_1319 at 1349.012 kb on - strand, within Synpcc7942_1319 at 1349.041 kb on - strand, within Synpcc7942_1319 at 1349.041 kb on - strand, within Synpcc7942_1319 at 1349.070 kb on + strand, within Synpcc7942_1319 at 1349.104 kb on + strand at 1349.104 kb on + strand, within Synpcc7942_1319 at 1349.104 kb on + strand, within Synpcc7942_1319 at 1349.104 kb on + strand, within Synpcc7942_1319 at 1349.104 kb on + strand, within Synpcc7942_1319 at 1349.104 kb on + strand, within Synpcc7942_1319 at 1349.104 kb on + strand, within Synpcc7942_1319 at 1349.112 kb on - strand, within Synpcc7942_1319 at 1349.112 kb on - strand, within Synpcc7942_1319 at 1349.112 kb on - strand, within Synpcc7942_1319 at 1349.112 kb on - strand, within Synpcc7942_1319 at 1349.112 kb on - strand, within Synpcc7942_1319 at 1349.112 kb on - strand, within Synpcc7942_1319 at 1349.112 kb on - strand, within Synpcc7942_1319 at 1349.112 kb on - strand, within Synpcc7942_1319 at 1349.112 kb on - strand, within Synpcc7942_1319 at 1349.118 kb on + strand, within Synpcc7942_1319 at 1349.130 kb on + strand, within Synpcc7942_1319 at 1349.131 kb on + strand, within Synpcc7942_1319 at 1349.134 kb on - strand, within Synpcc7942_1319 at 1349.144 kb on - strand, within Synpcc7942_1319 at 1349.148 kb on + strand, within Synpcc7942_1319 at 1349.149 kb on + strand, within Synpcc7942_1319 at 1349.184 kb on - strand, within Synpcc7942_1319 at 1349.186 kb on + strand, within Synpcc7942_1319 at 1349.222 kb on + strand, within Synpcc7942_1319 at 1349.254 kb on + strand, within Synpcc7942_1319 at 1349.259 kb on + strand, within Synpcc7942_1319 at 1349.282 kb on + strand, within Synpcc7942_1319 at 1349.293 kb on + strand, within Synpcc7942_1319 at 1349.318 kb on - strand, within Synpcc7942_1319 at 1349.326 kb on - strand at 1349.347 kb on - strand at 1349.348 kb on + strand at 1349.348 kb on + strand at 1349.353 kb on + strand at 1349.356 kb on - strand at 1349.358 kb on + strand at 1349.358 kb on + strand at 1349.366 kb on - strand at 1349.394 kb on + strand at 1349.401 kb on + strand at 1349.402 kb on - strand at 1349.402 kb on - strand at 1349.402 kb on - strand at 1349.402 kb on - strand at 1349.409 kb on - strand at 1349.414 kb on + strand at 1349.417 kb on - strand at 1349.437 kb on + strand, within Synpcc7942_1320 at 1349.447 kb on + strand, within Synpcc7942_1320 at 1349.468 kb on + strand, within Synpcc7942_1320 at 1349.498 kb on - strand, within Synpcc7942_1320 at 1349.549 kb on - strand, within Synpcc7942_1320 at 1349.557 kb on - strand, within Synpcc7942_1320 at 1349.596 kb on + strand, within Synpcc7942_1320 at 1349.596 kb on + strand, within Synpcc7942_1320 at 1349.604 kb on - strand, within Synpcc7942_1320 at 1349.604 kb on - strand, within Synpcc7942_1320 at 1349.604 kb on - strand, within Synpcc7942_1320 at 1349.604 kb on - strand, within Synpcc7942_1320 at 1349.604 kb on - strand, within Synpcc7942_1320 at 1349.625 kb on + strand, within Synpcc7942_1320 at 1349.651 kb on + strand, within Synpcc7942_1320 at 1349.659 kb on - strand, within Synpcc7942_1320 at 1349.660 kb on - strand, within Synpcc7942_1320 at 1349.660 kb on - strand, within Synpcc7942_1320 at 1349.673 kb on + strand, within Synpcc7942_1320 at 1349.680 kb on + strand, within Synpcc7942_1320 at 1349.686 kb on - strand, within Synpcc7942_1320 at 1349.688 kb on - strand, within Synpcc7942_1320 at 1349.688 kb on - strand, within Synpcc7942_1320 at 1349.688 kb on - strand, within Synpcc7942_1320 at 1349.724 kb on + strand, within Synpcc7942_1320 at 1349.735 kb on - strand, within Synpcc7942_1320 at 1349.738 kb on - strand, within Synpcc7942_1320
Per-strain Table
Position Strand Gene LocusTag Fraction plate grown in LD 12:12 remove 1,346,943 - mntC Synpcc7942_1316 0.83 -2.6 1,346,948 - mntC Synpcc7942_1316 0.84 -1.1 1,346,975 + mntC Synpcc7942_1316 0.87 -0.6 1,346,982 + mntC Synpcc7942_1316 0.87 +0.5 1,346,988 - mntC Synpcc7942_1316 0.88 -0.8 1,346,990 + mntC Synpcc7942_1316 0.88 -2.6 1,346,990 + -1.4 1,346,998 - mntC Synpcc7942_1316 0.89 -1.9 1,347,002 + mntC Synpcc7942_1316 0.89 -1.9 1,347,002 + mntC Synpcc7942_1316 0.89 -2.1 1,347,002 + mntC Synpcc7942_1316 0.89 -2.2 1,347,002 + mntC Synpcc7942_1316 0.89 -0.9 1,347,010 - mntC Synpcc7942_1316 0.90 -2.5 1,347,010 - mntC Synpcc7942_1316 0.90 -3.9 1,347,010 - mntC Synpcc7942_1316 0.90 -0.5 1,347,010 - +1.6 1,347,010 - mntC Synpcc7942_1316 0.90 -2.0 1,347,010 - mntC Synpcc7942_1316 0.90 -1.4 1,347,020 - -2.6 1,347,020 - -1.9 1,347,038 + -0.7 1,347,044 + -0.5 1,347,044 - -2.2 1,347,062 + -2.1 1,347,075 - -2.2 1,347,075 - -1.4 1,347,075 - -3.9 1,347,080 + -1.9 1,347,091 + +0.6 1,347,103 - -0.5 1,347,117 + -0.5 1,347,125 - -0.2 1,347,125 - -3.7 1,347,125 - -1.4 1,347,127 + +1.9 1,347,190 - -3.2 1,347,250 - mntA Synpcc7942_1317 0.10 -3.2 1,347,263 + mntA Synpcc7942_1317 0.12 -2.9 1,347,263 + mntA Synpcc7942_1317 0.12 -1.9 1,347,277 + mntA Synpcc7942_1317 0.14 -2.8 1,347,311 + mntA Synpcc7942_1317 0.19 -1.8 1,347,311 + mntA Synpcc7942_1317 0.19 -3.6 1,347,319 - mntA Synpcc7942_1317 0.20 -0.9 1,347,319 - mntA Synpcc7942_1317 0.20 -1.9 1,347,322 + mntA Synpcc7942_1317 0.20 -3.2 1,347,344 + mntA Synpcc7942_1317 0.23 -2.5 1,347,354 - mntA Synpcc7942_1317 0.25 -1.1 1,347,379 + mntA Synpcc7942_1317 0.28 -0.5 1,347,379 + mntA Synpcc7942_1317 0.28 -4.0 1,347,398 - mntA Synpcc7942_1317 0.30 -2.2 1,347,424 - mntA Synpcc7942_1317 0.34 -0.7 1,347,571 + mntA Synpcc7942_1317 0.54 -1.5 1,347,579 - mntA Synpcc7942_1317 0.55 -3.8 1,347,654 - mntA Synpcc7942_1317 0.65 -2.0 1,347,748 + mntA Synpcc7942_1317 0.78 -1.1 1,347,758 + mntA Synpcc7942_1317 0.79 -0.6 1,347,768 + mntA Synpcc7942_1317 0.81 -0.8 1,347,852 + -1.2 1,347,852 + -2.4 1,347,852 + -0.5 1,347,852 + +0.1 1,347,852 + -2.2 1,347,860 - +0.7 1,347,860 - -0.6 1,347,860 - +0.2 1,347,876 - +0.7 1,347,882 - -0.0 1,347,926 - -1.1 1,347,949 - -0.2 1,347,974 - -0.6 1,348,055 + mntB Synpcc7942_1318 0.16 -2.6 1,348,070 - mntB Synpcc7942_1318 0.18 -2.6 1,348,112 - mntB Synpcc7942_1318 0.23 -3.5 1,348,118 - mntB Synpcc7942_1318 0.24 -2.4 1,348,154 - mntB Synpcc7942_1318 0.28 -1.2 1,348,177 + mntB Synpcc7942_1318 0.31 -2.5 1,348,188 + mntB Synpcc7942_1318 0.32 -0.4 1,348,251 - mntB Synpcc7942_1318 0.39 -0.3 1,348,340 - mntB Synpcc7942_1318 0.50 -1.3 1,348,352 - mntB Synpcc7942_1318 0.51 -1.1 1,348,368 - mntB Synpcc7942_1318 0.53 -4.0 1,348,390 + mntB Synpcc7942_1318 0.56 -0.6 1,348,398 - mntB Synpcc7942_1318 0.56 -1.2 1,348,413 + mntB Synpcc7942_1318 0.58 +0.1 1,348,433 + mntB Synpcc7942_1318 0.61 -1.3 1,348,448 + mntB Synpcc7942_1318 0.62 +0.0 1,348,471 - mntB Synpcc7942_1318 0.65 -1.6 1,348,518 + mntB Synpcc7942_1318 0.71 -1.9 1,348,548 - mntB Synpcc7942_1318 0.74 -3.7 1,348,549 + mntB Synpcc7942_1318 0.74 -1.7 1,348,554 + mntB Synpcc7942_1318 0.75 -3.0 1,348,554 + mntB Synpcc7942_1318 0.75 +0.1 1,348,568 + mntB Synpcc7942_1318 0.76 -2.9 1,348,573 + mntB Synpcc7942_1318 0.77 -1.9 1,348,581 - mntB Synpcc7942_1318 0.78 -0.9 1,348,586 + mntB Synpcc7942_1318 0.79 -0.2 1,348,601 - mntB Synpcc7942_1318 0.80 -0.6 1,348,617 - mntB Synpcc7942_1318 0.82 -0.9 1,348,620 + mntB Synpcc7942_1318 0.83 -1.2 1,348,644 + mntB Synpcc7942_1318 0.85 -1.9 1,348,652 - mntB Synpcc7942_1318 0.86 -3.5 1,348,673 + mntB Synpcc7942_1318 0.89 -2.8 1,348,678 + mntB Synpcc7942_1318 0.89 -1.9 1,348,738 - -1.3 1,348,741 + +0.3 1,348,764 + +0.0 1,348,780 - +4.1 1,348,794 + +0.5 1,348,796 - +0.4 1,348,840 - +0.1 1,348,890 - Synpcc7942_1319 0.10 -0.9 1,348,972 - Synpcc7942_1319 0.26 +0.4 1,348,982 - Synpcc7942_1319 0.27 -0.1 1,348,987 + Synpcc7942_1319 0.28 +2.1 1,349,002 - Synpcc7942_1319 0.31 +0.8 1,349,004 + Synpcc7942_1319 0.31 +0.1 1,349,012 - Synpcc7942_1319 0.33 +0.2 1,349,041 - Synpcc7942_1319 0.38 -0.8 1,349,041 - Synpcc7942_1319 0.38 -0.6 1,349,070 + Synpcc7942_1319 0.44 -2.4 1,349,104 + -1.1 1,349,104 + Synpcc7942_1319 0.50 +0.9 1,349,104 + Synpcc7942_1319 0.50 +0.0 1,349,104 + Synpcc7942_1319 0.50 +0.0 1,349,104 + Synpcc7942_1319 0.50 +0.1 1,349,104 + Synpcc7942_1319 0.50 -0.2 1,349,104 + Synpcc7942_1319 0.50 +0.5 1,349,112 - Synpcc7942_1319 0.51 +0.1 1,349,112 - Synpcc7942_1319 0.51 -3.8 1,349,112 - Synpcc7942_1319 0.51 +0.0 1,349,112 - Synpcc7942_1319 0.51 -1.1 1,349,112 - Synpcc7942_1319 0.51 -0.8 1,349,112 - Synpcc7942_1319 0.51 +0.9 1,349,112 - Synpcc7942_1319 0.51 +1.7 1,349,112 - Synpcc7942_1319 0.51 +0.9 1,349,112 - Synpcc7942_1319 0.51 -0.3 1,349,118 + Synpcc7942_1319 0.53 +0.0 1,349,130 + Synpcc7942_1319 0.55 -0.1 1,349,131 + Synpcc7942_1319 0.55 +0.2 1,349,134 - Synpcc7942_1319 0.56 +1.3 1,349,144 - Synpcc7942_1319 0.57 +1.5 1,349,148 + Synpcc7942_1319 0.58 -4.9 1,349,149 + Synpcc7942_1319 0.58 +0.3 1,349,184 - Synpcc7942_1319 0.65 +0.5 1,349,186 + Synpcc7942_1319 0.65 -0.2 1,349,222 + Synpcc7942_1319 0.72 +1.2 1,349,254 + Synpcc7942_1319 0.78 -1.2 1,349,259 + Synpcc7942_1319 0.79 +1.4 1,349,282 + Synpcc7942_1319 0.83 +1.3 1,349,293 + Synpcc7942_1319 0.85 -0.2 1,349,318 - Synpcc7942_1319 0.90 +1.1 1,349,326 - -3.1 1,349,347 - -0.7 1,349,348 + -3.5 1,349,348 + +0.1 1,349,353 + +1.0 1,349,356 - +1.1 1,349,358 + -2.5 1,349,358 + -3.1 1,349,366 - -1.4 1,349,394 + +0.9 1,349,401 + +0.3 1,349,402 - +1.1 1,349,402 - +0.3 1,349,402 - +0.9 1,349,402 - +0.3 1,349,409 - +1.0 1,349,414 + -3.0 1,349,417 - +0.3 1,349,437 + Synpcc7942_1320 0.10 +1.4 1,349,447 + Synpcc7942_1320 0.11 -1.4 1,349,468 + Synpcc7942_1320 0.13 +2.1 1,349,498 - Synpcc7942_1320 0.17 +0.1 1,349,549 - Synpcc7942_1320 0.22 +0.4 1,349,557 - Synpcc7942_1320 0.23 -2.1 1,349,596 + Synpcc7942_1320 0.27 -0.9 1,349,596 + Synpcc7942_1320 0.27 -0.3 1,349,604 - Synpcc7942_1320 0.28 -0.2 1,349,604 - Synpcc7942_1320 0.28 -0.1 1,349,604 - Synpcc7942_1320 0.28 +0.3 1,349,604 - Synpcc7942_1320 0.28 -0.5 1,349,604 - Synpcc7942_1320 0.28 +0.2 1,349,625 + Synpcc7942_1320 0.30 -0.2 1,349,651 + Synpcc7942_1320 0.32 -1.9 1,349,659 - Synpcc7942_1320 0.33 -2.2 1,349,660 - Synpcc7942_1320 0.33 -2.9 1,349,660 - Synpcc7942_1320 0.33 +1.2 1,349,673 + Synpcc7942_1320 0.35 +0.4 1,349,680 + Synpcc7942_1320 0.36 -1.3 1,349,686 - Synpcc7942_1320 0.36 +0.6 1,349,688 - Synpcc7942_1320 0.36 -3.2 1,349,688 - Synpcc7942_1320 0.36 -0.6 1,349,688 - Synpcc7942_1320 0.36 +1.4 1,349,724 + Synpcc7942_1320 0.40 +0.4 1,349,735 - Synpcc7942_1320 0.41 +0.2 1,349,738 - Synpcc7942_1320 0.42 +0.2
Or see this region's nucleotide sequence