Experiment: plate grown in LD 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0683 and fabG are separated by 57 nucleotides fabG and groEL are separated by 106 nucleotides groEL and Synpcc7942_0686 are separated by 429 nucleotides
Synpcc7942_0683: Synpcc7942_0683 - potassium channel protein, at 676,942 to 677,967
_0683
Synpcc7942_0684: fabG - 3-oxoacyl-[acyl-carrier-protein] reductase, at 678,025 to 678,774
fabG
Synpcc7942_0685: groEL - chaperonin GroEL, at 678,881 to 680,548
groEL
Synpcc7942_0686: Synpcc7942_0686 - FO synthase subunit 2, at 680,978 to 682,138
_0686
Position (kb) 678
679
680
681 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 677.899 kb on + strand at 677.899 kb on - strand at 677.908 kb on + strand at 677.919 kb on + strand at 677.919 kb on + strand at 677.927 kb on - strand at 678.013 kb on - strand at 678.030 kb on - strand at 678.030 kb on - strand at 678.768 kb on + strand at 678.768 kb on + strand at 678.768 kb on + strand at 678.776 kb on - strand at 678.806 kb on + strand at 678.806 kb on + strand at 678.812 kb on - strand at 678.814 kb on - strand at 678.829 kb on - strand at 678.854 kb on - strand at 678.857 kb on + strand at 678.859 kb on + strand at 678.867 kb on + strand at 678.974 kb on - strand at 678.982 kb on + strand at 679.006 kb on + strand at 679.029 kb on + strand at 679.078 kb on + strand, within groEL at 679.088 kb on - strand, within groEL at 679.095 kb on - strand, within groEL at 679.097 kb on + strand, within groEL at 679.097 kb on + strand, within groEL at 679.105 kb on - strand, within groEL at 679.124 kb on - strand, within groEL at 679.152 kb on + strand, within groEL at 679.157 kb on + strand at 679.162 kb on + strand, within groEL at 679.165 kb on - strand, within groEL at 679.184 kb on + strand, within groEL at 679.228 kb on - strand, within groEL at 679.280 kb on + strand, within groEL at 679.282 kb on - strand, within groEL at 679.373 kb on - strand, within groEL at 679.375 kb on + strand, within groEL at 679.375 kb on + strand, within groEL at 679.375 kb on + strand, within groEL at 679.383 kb on - strand, within groEL at 679.404 kb on + strand, within groEL at 679.474 kb on + strand, within groEL at 679.474 kb on + strand, within groEL at 679.511 kb on + strand, within groEL at 679.511 kb on + strand, within groEL at 679.600 kb on - strand, within groEL at 679.616 kb on + strand, within groEL at 679.657 kb on - strand, within groEL at 679.685 kb on + strand, within groEL at 679.687 kb on + strand, within groEL at 679.687 kb on + strand, within groEL at 679.693 kb on - strand, within groEL at 679.693 kb on - strand, within groEL at 679.693 kb on - strand, within groEL at 679.695 kb on - strand, within groEL at 679.695 kb on - strand, within groEL at 679.711 kb on - strand, within groEL at 679.716 kb on + strand, within groEL at 679.716 kb on + strand, within groEL at 679.729 kb on + strand, within groEL at 679.729 kb on + strand, within groEL at 679.737 kb on - strand, within groEL at 679.737 kb on - strand, within groEL at 679.742 kb on + strand, within groEL at 679.770 kb on - strand, within groEL at 679.794 kb on + strand, within groEL at 679.808 kb on - strand, within groEL at 679.824 kb on - strand, within groEL at 679.843 kb on - strand, within groEL at 679.843 kb on - strand, within groEL at 679.843 kb on - strand, within groEL at 679.869 kb on - strand, within groEL at 679.891 kb on - strand, within groEL at 679.916 kb on + strand at 679.924 kb on - strand, within groEL at 680.019 kb on - strand, within groEL at 680.034 kb on + strand, within groEL at 680.067 kb on + strand, within groEL at 680.079 kb on + strand, within groEL at 680.106 kb on + strand, within groEL at 680.116 kb on - strand, within groEL at 680.130 kb on + strand, within groEL at 680.132 kb on + strand, within groEL at 680.132 kb on + strand, within groEL at 680.132 kb on + strand, within groEL at 680.143 kb on + strand, within groEL at 680.150 kb on + strand, within groEL at 680.151 kb on - strand, within groEL at 680.158 kb on - strand, within groEL at 680.176 kb on + strand, within groEL at 680.239 kb on - strand, within groEL at 680.242 kb on - strand, within groEL at 680.261 kb on + strand, within groEL at 680.266 kb on + strand, within groEL at 680.267 kb on - strand, within groEL at 680.269 kb on - strand at 680.276 kb on - strand, within groEL at 680.336 kb on + strand, within groEL at 680.338 kb on - strand, within groEL at 680.338 kb on - strand, within groEL at 680.371 kb on + strand, within groEL at 680.379 kb on - strand, within groEL at 680.379 kb on - strand, within groEL at 680.497 kb on + strand at 680.540 kb on - strand at 680.545 kb on - strand at 680.550 kb on - strand at 680.572 kb on - strand at 680.572 kb on - strand at 680.594 kb on - strand at 680.652 kb on + strand at 680.679 kb on + strand at 680.686 kb on + strand at 680.705 kb on + strand at 680.712 kb on + strand at 680.814 kb on + strand at 680.817 kb on + strand at 680.822 kb on - strand at 680.826 kb on + strand at 680.826 kb on + strand at 680.834 kb on - strand at 680.870 kb on + strand at 680.870 kb on + strand at 680.878 kb on - strand at 680.932 kb on - strand at 680.963 kb on + strand at 680.968 kb on + strand at 681.094 kb on + strand, within Synpcc7942_0686 at 681.118 kb on - strand, within Synpcc7942_0686 at 681.120 kb on + strand, within Synpcc7942_0686 at 681.123 kb on + strand, within Synpcc7942_0686 at 681.138 kb on - strand, within Synpcc7942_0686 at 681.232 kb on + strand, within Synpcc7942_0686 at 681.235 kb on - strand, within Synpcc7942_0686 at 681.325 kb on + strand, within Synpcc7942_0686 at 681.387 kb on + strand, within Synpcc7942_0686 at 681.387 kb on + strand, within Synpcc7942_0686 at 681.387 kb on + strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.400 kb on - strand, within Synpcc7942_0686 at 681.482 kb on + strand, within Synpcc7942_0686 at 681.484 kb on + strand, within Synpcc7942_0686 at 681.484 kb on + strand at 681.490 kb on - strand, within Synpcc7942_0686 at 681.492 kb on - strand, within Synpcc7942_0686 at 681.525 kb on + strand, within Synpcc7942_0686 at 681.539 kb on + strand, within Synpcc7942_0686 at 681.539 kb on + strand, within Synpcc7942_0686 at 681.539 kb on + strand, within Synpcc7942_0686
Per-strain Table
Position Strand Gene LocusTag Fraction plate grown in LD 12:12 remove 677,899 + +0.7 677,899 - -4.1 677,908 + +0.9 677,919 + +0.2 677,919 + -0.9 677,927 - +1.0 678,013 - -0.5 678,030 - +0.6 678,030 - +1.7 678,768 + -1.4 678,768 + +0.6 678,768 + -4.1 678,776 - +0.6 678,806 + -1.9 678,806 + -0.4 678,812 - +0.5 678,814 - -3.2 678,829 - +0.6 678,854 - +0.2 678,857 + -0.5 678,859 + +0.9 678,867 + -0.7 678,974 - -1.9 678,982 + -3.9 679,006 + -3.3 679,029 + -0.3 679,078 + groEL Synpcc7942_0685 0.12 +0.4 679,088 - groEL Synpcc7942_0685 0.12 -1.5 679,095 - groEL Synpcc7942_0685 0.13 -0.7 679,097 + groEL Synpcc7942_0685 0.13 -2.7 679,097 + groEL Synpcc7942_0685 0.13 -0.1 679,105 - groEL Synpcc7942_0685 0.13 -2.3 679,124 - groEL Synpcc7942_0685 0.15 -1.2 679,152 + groEL Synpcc7942_0685 0.16 -1.9 679,157 + +0.2 679,162 + groEL Synpcc7942_0685 0.17 -1.1 679,165 - groEL Synpcc7942_0685 0.17 -0.5 679,184 + groEL Synpcc7942_0685 0.18 -2.1 679,228 - groEL Synpcc7942_0685 0.21 -2.0 679,280 + groEL Synpcc7942_0685 0.24 -2.0 679,282 - groEL Synpcc7942_0685 0.24 -3.9 679,373 - groEL Synpcc7942_0685 0.29 -0.9 679,375 + groEL Synpcc7942_0685 0.30 -1.9 679,375 + groEL Synpcc7942_0685 0.30 -0.1 679,375 + groEL Synpcc7942_0685 0.30 -1.4 679,383 - groEL Synpcc7942_0685 0.30 -3.0 679,404 + groEL Synpcc7942_0685 0.31 -1.1 679,474 + groEL Synpcc7942_0685 0.36 +0.3 679,474 + groEL Synpcc7942_0685 0.36 -1.6 679,511 + groEL Synpcc7942_0685 0.38 -1.0 679,511 + groEL Synpcc7942_0685 0.38 -3.5 679,600 - groEL Synpcc7942_0685 0.43 -1.2 679,616 + groEL Synpcc7942_0685 0.44 -1.1 679,657 - groEL Synpcc7942_0685 0.47 -1.8 679,685 + groEL Synpcc7942_0685 0.48 -1.9 679,687 + groEL Synpcc7942_0685 0.48 -0.1 679,687 + groEL Synpcc7942_0685 0.48 -0.1 679,693 - groEL Synpcc7942_0685 0.49 -1.7 679,693 - groEL Synpcc7942_0685 0.49 -0.4 679,693 - groEL Synpcc7942_0685 0.49 -1.4 679,695 - groEL Synpcc7942_0685 0.49 -1.4 679,695 - groEL Synpcc7942_0685 0.49 -0.7 679,711 - groEL Synpcc7942_0685 0.50 -0.3 679,716 + groEL Synpcc7942_0685 0.50 -1.1 679,716 + groEL Synpcc7942_0685 0.50 -2.2 679,729 + groEL Synpcc7942_0685 0.51 -0.8 679,729 + groEL Synpcc7942_0685 0.51 -2.9 679,737 - groEL Synpcc7942_0685 0.51 -1.2 679,737 - groEL Synpcc7942_0685 0.51 -3.2 679,742 + groEL Synpcc7942_0685 0.52 -2.8 679,770 - groEL Synpcc7942_0685 0.53 -2.2 679,794 + groEL Synpcc7942_0685 0.55 -3.1 679,808 - groEL Synpcc7942_0685 0.56 -1.1 679,824 - groEL Synpcc7942_0685 0.57 -1.2 679,843 - groEL Synpcc7942_0685 0.58 -1.7 679,843 - groEL Synpcc7942_0685 0.58 -3.6 679,843 - groEL Synpcc7942_0685 0.58 -2.3 679,869 - groEL Synpcc7942_0685 0.59 -2.2 679,891 - groEL Synpcc7942_0685 0.61 -0.9 679,916 + -1.1 679,924 - groEL Synpcc7942_0685 0.63 -2.7 680,019 - groEL Synpcc7942_0685 0.68 +0.6 680,034 + groEL Synpcc7942_0685 0.69 -3.3 680,067 + groEL Synpcc7942_0685 0.71 -1.4 680,079 + groEL Synpcc7942_0685 0.72 -0.4 680,106 + groEL Synpcc7942_0685 0.73 -1.1 680,116 - groEL Synpcc7942_0685 0.74 -1.0 680,130 + groEL Synpcc7942_0685 0.75 -2.4 680,132 + groEL Synpcc7942_0685 0.75 -3.1 680,132 + groEL Synpcc7942_0685 0.75 -1.0 680,132 + groEL Synpcc7942_0685 0.75 -1.2 680,143 + groEL Synpcc7942_0685 0.76 -1.1 680,150 + groEL Synpcc7942_0685 0.76 -1.7 680,151 - groEL Synpcc7942_0685 0.76 -4.2 680,158 - groEL Synpcc7942_0685 0.77 -1.1 680,176 + groEL Synpcc7942_0685 0.78 -0.9 680,239 - groEL Synpcc7942_0685 0.81 -1.6 680,242 - groEL Synpcc7942_0685 0.82 -3.2 680,261 + groEL Synpcc7942_0685 0.83 -2.2 680,266 + groEL Synpcc7942_0685 0.83 +0.1 680,267 - groEL Synpcc7942_0685 0.83 -1.7 680,269 - +0.1 680,276 - groEL Synpcc7942_0685 0.84 -0.6 680,336 + groEL Synpcc7942_0685 0.87 -2.8 680,338 - groEL Synpcc7942_0685 0.87 -0.4 680,338 - groEL Synpcc7942_0685 0.87 -0.8 680,371 + groEL Synpcc7942_0685 0.89 -0.4 680,379 - groEL Synpcc7942_0685 0.90 -2.9 680,379 - groEL Synpcc7942_0685 0.90 -2.8 680,497 + -1.1 680,540 - -3.4 680,545 - -0.3 680,550 - -0.0 680,572 - -0.2 680,572 - -2.6 680,594 - +0.8 680,652 + -0.9 680,679 + +0.1 680,686 + -1.7 680,705 + -0.1 680,712 + -0.2 680,814 + -2.8 680,817 + -2.1 680,822 - -0.7 680,826 + +1.1 680,826 + -2.7 680,834 - +0.3 680,870 + +0.4 680,870 + -0.4 680,878 - +0.9 680,932 - +0.4 680,963 + -0.1 680,968 + +1.3 681,094 + Synpcc7942_0686 0.10 -2.4 681,118 - Synpcc7942_0686 0.12 -0.7 681,120 + Synpcc7942_0686 0.12 +0.3 681,123 + Synpcc7942_0686 0.12 -0.3 681,138 - Synpcc7942_0686 0.14 -2.0 681,232 + Synpcc7942_0686 0.22 +0.2 681,235 - Synpcc7942_0686 0.22 +0.3 681,325 + Synpcc7942_0686 0.30 +0.7 681,387 + Synpcc7942_0686 0.35 -2.2 681,387 + Synpcc7942_0686 0.35 +0.5 681,387 + Synpcc7942_0686 0.35 -0.4 681,395 - Synpcc7942_0686 0.36 +1.2 681,395 - Synpcc7942_0686 0.36 +1.3 681,395 - Synpcc7942_0686 0.36 +0.3 681,395 - Synpcc7942_0686 0.36 +0.3 681,400 - Synpcc7942_0686 0.36 -0.5 681,482 + Synpcc7942_0686 0.43 +0.3 681,484 + Synpcc7942_0686 0.44 +0.0 681,484 + -1.1 681,490 - Synpcc7942_0686 0.44 +1.7 681,492 - Synpcc7942_0686 0.44 +1.3 681,525 + Synpcc7942_0686 0.47 -0.5 681,539 + Synpcc7942_0686 0.48 -0.4 681,539 + Synpcc7942_0686 0.48 -1.8 681,539 + Synpcc7942_0686 0.48 -4.6
Or see this region's nucleotide sequence