Experiment: plate grown in LD 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0527 and Synpcc7942_0528 are separated by 354 nucleotides Synpcc7942_0528 and nagB overlap by 36 nucleotides nagB and Synpcc7942_0530 are separated by 3 nucleotides
Synpcc7942_0527: Synpcc7942_0527 - hypothetical protein, at 511,398 to 512,234
_0527
Synpcc7942_0528: Synpcc7942_0528 - Lipopolysaccharide biosynthesis proteins LPS, at 512,589 to 513,578
_0528
Synpcc7942_0529: nagB - 6-phosphogluconolactonase, at 513,543 to 514,331
nagB
Synpcc7942_0530: Synpcc7942_0530 - 4Fe-4S cluster binding, at 514,335 to 515,288
_0530
Position (kb) 512
513
514 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 511.653 kb on + strand, within Synpcc7942_0527 at 511.661 kb on - strand, within Synpcc7942_0527 at 511.671 kb on - strand, within Synpcc7942_0527 at 511.721 kb on - strand, within Synpcc7942_0527 at 511.762 kb on + strand, within Synpcc7942_0527 at 511.763 kb on + strand, within Synpcc7942_0527 at 511.770 kb on - strand, within Synpcc7942_0527 at 511.771 kb on - strand, within Synpcc7942_0527 at 511.771 kb on - strand, within Synpcc7942_0527 at 511.946 kb on - strand, within Synpcc7942_0527 at 511.960 kb on + strand, within Synpcc7942_0527 at 511.964 kb on - strand, within Synpcc7942_0527 at 511.968 kb on - strand, within Synpcc7942_0527 at 512.049 kb on - strand, within Synpcc7942_0527 at 512.068 kb on - strand, within Synpcc7942_0527 at 512.085 kb on + strand, within Synpcc7942_0527 at 512.092 kb on + strand, within Synpcc7942_0527 at 512.092 kb on + strand, within Synpcc7942_0527 at 512.095 kb on + strand, within Synpcc7942_0527 at 512.095 kb on + strand, within Synpcc7942_0527 at 512.100 kb on - strand, within Synpcc7942_0527 at 512.127 kb on - strand, within Synpcc7942_0527 at 512.129 kb on - strand, within Synpcc7942_0527 at 512.139 kb on - strand, within Synpcc7942_0527 at 512.144 kb on + strand, within Synpcc7942_0527 at 512.178 kb on - strand at 512.178 kb on - strand at 512.191 kb on + strand at 512.191 kb on + strand at 512.199 kb on - strand at 512.210 kb on - strand at 512.210 kb on - strand at 512.235 kb on + strand at 512.235 kb on + strand at 512.243 kb on - strand at 512.332 kb on - strand at 512.532 kb on + strand at 512.532 kb on + strand at 512.540 kb on - strand at 512.563 kb on + strand at 512.569 kb on + strand at 512.578 kb on + strand at 512.599 kb on - strand at 512.601 kb on + strand at 512.607 kb on + strand at 512.607 kb on + strand at 512.607 kb on + strand at 512.609 kb on - strand at 512.609 kb on - strand at 512.610 kb on - strand at 512.610 kb on - strand at 512.610 kb on - strand at 512.626 kb on - strand at 512.629 kb on - strand at 512.658 kb on + strand at 512.725 kb on - strand, within Synpcc7942_0528 at 512.757 kb on + strand, within Synpcc7942_0528 at 512.799 kb on - strand, within Synpcc7942_0528 at 512.812 kb on + strand, within Synpcc7942_0528 at 512.814 kb on + strand, within Synpcc7942_0528 at 512.879 kb on - strand, within Synpcc7942_0528 at 512.921 kb on + strand, within Synpcc7942_0528 at 512.943 kb on + strand, within Synpcc7942_0528 at 512.951 kb on - strand, within Synpcc7942_0528 at 512.957 kb on - strand, within Synpcc7942_0528 at 512.962 kb on + strand, within Synpcc7942_0528 at 512.970 kb on - strand, within Synpcc7942_0528 at 512.973 kb on + strand, within Synpcc7942_0528 at 512.983 kb on + strand, within Synpcc7942_0528 at 513.024 kb on + strand, within Synpcc7942_0528 at 513.029 kb on - strand, within Synpcc7942_0528 at 513.049 kb on + strand, within Synpcc7942_0528 at 513.160 kb on - strand, within Synpcc7942_0528 at 513.162 kb on - strand, within Synpcc7942_0528 at 513.171 kb on - strand, within Synpcc7942_0528 at 513.182 kb on + strand, within Synpcc7942_0528 at 513.203 kb on + strand, within Synpcc7942_0528 at 513.249 kb on + strand, within Synpcc7942_0528 at 513.251 kb on + strand, within Synpcc7942_0528 at 513.257 kb on - strand, within Synpcc7942_0528 at 513.262 kb on - strand, within Synpcc7942_0528 at 513.378 kb on + strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.386 kb on - strand, within Synpcc7942_0528 at 513.416 kb on + strand, within Synpcc7942_0528 at 513.418 kb on - strand, within Synpcc7942_0528 at 513.447 kb on + strand, within Synpcc7942_0528 at 513.460 kb on - strand, within Synpcc7942_0528 at 513.476 kb on - strand, within Synpcc7942_0528 at 513.488 kb on + strand at 513.496 kb on - strand at 513.499 kb on + strand at 513.512 kb on + strand at 513.516 kb on + strand at 513.516 kb on + strand at 513.519 kb on - strand at 513.520 kb on - strand at 513.524 kb on - strand at 513.524 kb on - strand at 513.533 kb on + strand at 513.547 kb on - strand at 513.559 kb on - strand at 513.561 kb on + strand at 513.564 kb on - strand at 513.564 kb on - strand at 513.575 kb on + strand at 513.581 kb on + strand at 513.583 kb on - strand at 513.593 kb on - strand at 513.593 kb on - strand at 513.596 kb on + strand at 513.596 kb on + strand at 513.605 kb on - strand at 513.630 kb on + strand, within nagB at 513.671 kb on - strand, within nagB at 513.693 kb on - strand, within nagB at 513.723 kb on - strand, within nagB at 513.735 kb on + strand, within nagB at 513.754 kb on - strand, within nagB at 513.765 kb on + strand, within nagB at 513.766 kb on - strand, within nagB at 513.775 kb on + strand, within nagB at 513.799 kb on + strand, within nagB at 513.814 kb on - strand, within nagB at 513.816 kb on + strand, within nagB at 513.856 kb on + strand, within nagB at 513.858 kb on - strand, within nagB at 513.908 kb on + strand, within nagB at 513.916 kb on - strand, within nagB at 513.940 kb on - strand, within nagB at 513.990 kb on + strand, within nagB at 513.990 kb on + strand, within nagB at 514.004 kb on - strand, within nagB at 514.019 kb on - strand, within nagB at 514.027 kb on + strand, within nagB at 514.067 kb on - strand, within nagB at 514.080 kb on + strand, within nagB at 514.088 kb on - strand, within nagB at 514.088 kb on - strand, within nagB at 514.094 kb on + strand, within nagB at 514.247 kb on - strand, within nagB at 514.272 kb on - strand at 514.289 kb on + strand at 514.297 kb on - strand at 514.330 kb on + strand at 514.358 kb on + strand at 514.361 kb on - strand at 514.361 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.366 kb on - strand at 514.392 kb on - strand at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.458 kb on + strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.466 kb on - strand, within Synpcc7942_0530 at 514.527 kb on + strand, within Synpcc7942_0530 at 514.540 kb on + strand, within Synpcc7942_0530 at 514.552 kb on - strand, within Synpcc7942_0530 at 514.559 kb on + strand, within Synpcc7942_0530 at 514.561 kb on + strand, within Synpcc7942_0530 at 514.562 kb on - strand, within Synpcc7942_0530 at 514.567 kb on - strand, within Synpcc7942_0530
Per-strain Table
Position Strand Gene LocusTag Fraction plate grown in LD 12:12 remove 511,653 + Synpcc7942_0527 0.30 -0.9 511,661 - Synpcc7942_0527 0.31 +1.1 511,671 - Synpcc7942_0527 0.33 -2.7 511,721 - Synpcc7942_0527 0.39 +0.8 511,762 + Synpcc7942_0527 0.43 -2.4 511,763 + Synpcc7942_0527 0.44 +1.7 511,770 - Synpcc7942_0527 0.44 -2.3 511,771 - Synpcc7942_0527 0.45 +1.9 511,771 - Synpcc7942_0527 0.45 +0.3 511,946 - Synpcc7942_0527 0.65 +0.5 511,960 + Synpcc7942_0527 0.67 -0.6 511,964 - Synpcc7942_0527 0.68 -0.9 511,968 - Synpcc7942_0527 0.68 +0.2 512,049 - Synpcc7942_0527 0.78 +0.4 512,068 - Synpcc7942_0527 0.80 +0.9 512,085 + Synpcc7942_0527 0.82 -2.3 512,092 + Synpcc7942_0527 0.83 +0.5 512,092 + Synpcc7942_0527 0.83 +0.5 512,095 + Synpcc7942_0527 0.83 +0.8 512,095 + Synpcc7942_0527 0.83 +0.6 512,100 - Synpcc7942_0527 0.84 -0.6 512,127 - Synpcc7942_0527 0.87 +0.6 512,129 - Synpcc7942_0527 0.87 +0.2 512,139 - Synpcc7942_0527 0.89 +0.7 512,144 + Synpcc7942_0527 0.89 +0.5 512,178 - +1.3 512,178 - +0.9 512,191 + +0.7 512,191 + -1.4 512,199 - +1.7 512,210 - +1.4 512,210 - +0.8 512,235 + +1.7 512,235 + +1.7 512,243 - +1.4 512,332 - +0.9 512,532 + +0.6 512,532 + -2.5 512,540 - -0.3 512,563 + +0.5 512,569 + -4.7 512,578 + +0.9 512,599 - +0.4 512,601 + -1.7 512,607 + -1.4 512,607 + -2.3 512,607 + -1.1 512,609 - -2.1 512,609 - +0.2 512,610 - -1.9 512,610 - -0.3 512,610 - -1.1 512,626 - -0.5 512,629 - -2.9 512,658 + -0.2 512,725 - Synpcc7942_0528 0.14 +0.4 512,757 + Synpcc7942_0528 0.17 -1.0 512,799 - Synpcc7942_0528 0.21 -2.2 512,812 + Synpcc7942_0528 0.23 -2.0 512,814 + Synpcc7942_0528 0.23 -2.1 512,879 - Synpcc7942_0528 0.29 -1.3 512,921 + Synpcc7942_0528 0.34 -2.4 512,943 + Synpcc7942_0528 0.36 -0.3 512,951 - Synpcc7942_0528 0.37 -3.2 512,957 - Synpcc7942_0528 0.37 -3.5 512,962 + Synpcc7942_0528 0.38 -2.2 512,970 - Synpcc7942_0528 0.38 -3.9 512,973 + Synpcc7942_0528 0.39 -2.9 512,983 + Synpcc7942_0528 0.40 -1.5 513,024 + Synpcc7942_0528 0.44 -2.4 513,029 - Synpcc7942_0528 0.44 -0.4 513,049 + Synpcc7942_0528 0.46 -1.9 513,160 - Synpcc7942_0528 0.58 -3.3 513,162 - Synpcc7942_0528 0.58 -1.2 513,171 - Synpcc7942_0528 0.59 -1.0 513,182 + Synpcc7942_0528 0.60 -1.8 513,203 + Synpcc7942_0528 0.62 -2.4 513,249 + Synpcc7942_0528 0.67 -1.2 513,251 + Synpcc7942_0528 0.67 -3.3 513,257 - Synpcc7942_0528 0.67 -1.6 513,262 - Synpcc7942_0528 0.68 -0.9 513,378 + Synpcc7942_0528 0.80 -3.7 513,386 - Synpcc7942_0528 0.81 -4.1 513,386 - Synpcc7942_0528 0.81 -1.1 513,386 - Synpcc7942_0528 0.81 -0.8 513,386 - Synpcc7942_0528 0.81 -2.4 513,416 + Synpcc7942_0528 0.84 -1.8 513,418 - Synpcc7942_0528 0.84 -2.7 513,447 + Synpcc7942_0528 0.87 -1.0 513,460 - Synpcc7942_0528 0.88 -3.3 513,476 - Synpcc7942_0528 0.90 -2.8 513,488 + +1.7 513,496 - -2.7 513,499 + -1.0 513,512 + -2.9 513,516 + +0.7 513,516 + -0.6 513,519 - -1.3 513,520 - -2.5 513,524 - -2.3 513,524 - +0.4 513,533 + -1.2 513,547 - -0.9 513,559 - -1.4 513,561 + -3.5 513,564 - -1.3 513,564 - -1.7 513,575 + -0.9 513,581 + -2.4 513,583 - -0.5 513,593 - -0.4 513,593 - -0.6 513,596 + -1.1 513,596 + -3.3 513,605 - -0.7 513,630 + nagB Synpcc7942_0529 0.11 -0.2 513,671 - nagB Synpcc7942_0529 0.16 -2.5 513,693 - nagB Synpcc7942_0529 0.19 -0.6 513,723 - nagB Synpcc7942_0529 0.23 -1.0 513,735 + nagB Synpcc7942_0529 0.24 -0.2 513,754 - nagB Synpcc7942_0529 0.27 -2.8 513,765 + nagB Synpcc7942_0529 0.28 -2.1 513,766 - nagB Synpcc7942_0529 0.28 -1.2 513,775 + nagB Synpcc7942_0529 0.29 -1.2 513,799 + nagB Synpcc7942_0529 0.32 -0.4 513,814 - nagB Synpcc7942_0529 0.34 -1.3 513,816 + nagB Synpcc7942_0529 0.35 -2.1 513,856 + nagB Synpcc7942_0529 0.40 -1.0 513,858 - nagB Synpcc7942_0529 0.40 -0.7 513,908 + nagB Synpcc7942_0529 0.46 -1.2 513,916 - nagB Synpcc7942_0529 0.47 -1.5 513,940 - nagB Synpcc7942_0529 0.50 -1.8 513,990 + nagB Synpcc7942_0529 0.57 +0.6 513,990 + nagB Synpcc7942_0529 0.57 +0.4 514,004 - nagB Synpcc7942_0529 0.58 +0.5 514,019 - nagB Synpcc7942_0529 0.60 -2.4 514,027 + nagB Synpcc7942_0529 0.61 -1.7 514,067 - nagB Synpcc7942_0529 0.66 -0.7 514,080 + nagB Synpcc7942_0529 0.68 -2.4 514,088 - nagB Synpcc7942_0529 0.69 -2.9 514,088 - nagB Synpcc7942_0529 0.69 -1.0 514,094 + nagB Synpcc7942_0529 0.70 -0.9 514,247 - nagB Synpcc7942_0529 0.89 -1.2 514,272 - -0.5 514,289 + -0.6 514,297 - +1.4 514,330 + -0.9 514,358 + -0.5 514,361 - +1.4 514,361 - -0.8 514,366 - -0.9 514,366 - +1.0 514,366 - -1.2 514,366 - +2.1 514,366 - +0.2 514,366 - +0.2 514,392 - -2.1 514,458 + Synpcc7942_0530 0.13 +0.3 514,458 + Synpcc7942_0530 0.13 +0.8 514,458 + Synpcc7942_0530 0.13 +0.1 514,458 + Synpcc7942_0530 0.13 +1.8 514,458 + Synpcc7942_0530 0.13 -1.4 514,466 - Synpcc7942_0530 0.14 -0.3 514,466 - Synpcc7942_0530 0.14 +0.9 514,466 - Synpcc7942_0530 0.14 -0.2 514,466 - Synpcc7942_0530 0.14 -0.4 514,466 - Synpcc7942_0530 0.14 -0.4 514,527 + Synpcc7942_0530 0.20 -0.7 514,540 + Synpcc7942_0530 0.21 +0.1 514,552 - Synpcc7942_0530 0.23 +0.0 514,559 + Synpcc7942_0530 0.23 +1.2 514,561 + Synpcc7942_0530 0.24 +0.3 514,562 - Synpcc7942_0530 0.24 +0.7 514,567 - Synpcc7942_0530 0.24 +0.8
Or see this region's nucleotide sequence