Experiment: plate grown in LD 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0482 and Synpcc7942_0483 are separated by 2 nucleotides Synpcc7942_0483 and Synpcc7942_0484 are separated by 212 nucleotides Synpcc7942_0484 and gpmB are separated by 100 nucleotides
Synpcc7942_0482: Synpcc7942_0482 - Peptidoglycan glycosyltransferase, at 467,004 to 468,773
_0482
Synpcc7942_0483: Synpcc7942_0483 - hypothetical protein, at 468,776 to 469,219
_0483
Synpcc7942_0484: Synpcc7942_0484 - hypothetical protein, at 469,432 to 470,874
_0484
Synpcc7942_0485: gpmB - phosphoglycerate mutase, at 470,975 to 472,312
gpmB
Position (kb) 469
470
471 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 468.704 kb on + strand at 468.748 kb on + strand at 468.756 kb on - strand at 469.134 kb on + strand, within Synpcc7942_0483 at 469.161 kb on + strand, within Synpcc7942_0483 at 469.237 kb on + strand at 469.346 kb on + strand at 469.419 kb on + strand at 469.419 kb on + strand at 469.424 kb on + strand at 469.424 kb on + strand at 469.424 kb on + strand at 469.427 kb on - strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.430 kb on + strand at 469.437 kb on - strand at 469.437 kb on - strand at 469.437 kb on - strand at 469.452 kb on - strand at 469.452 kb on - strand at 469.459 kb on + strand at 469.459 kb on + strand at 469.531 kb on - strand at 469.600 kb on + strand, within Synpcc7942_0484 at 469.657 kb on - strand, within Synpcc7942_0484 at 469.721 kb on + strand, within Synpcc7942_0484 at 469.807 kb on + strand, within Synpcc7942_0484 at 469.834 kb on + strand, within Synpcc7942_0484 at 469.883 kb on + strand, within Synpcc7942_0484 at 469.893 kb on + strand, within Synpcc7942_0484 at 470.144 kb on + strand, within Synpcc7942_0484 at 470.167 kb on - strand, within Synpcc7942_0484 at 470.302 kb on - strand, within Synpcc7942_0484 at 470.573 kb on - strand, within Synpcc7942_0484 at 470.599 kb on + strand, within Synpcc7942_0484 at 470.654 kb on + strand, within Synpcc7942_0484 at 470.719 kb on - strand, within Synpcc7942_0484 at 470.764 kb on - strand at 470.780 kb on + strand at 470.836 kb on - strand at 470.853 kb on - strand at 470.860 kb on - strand at 470.860 kb on - strand at 470.860 kb on - strand at 470.871 kb on + strand at 470.906 kb on - strand at 470.945 kb on + strand at 470.947 kb on + strand at 470.947 kb on + strand at 470.947 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plate grown in LD 12:12 remove 468,704 + +2.4 468,748 + -0.1 468,756 - -0.3 469,134 + Synpcc7942_0483 0.81 +1.5 469,161 + Synpcc7942_0483 0.87 +1.3 469,237 + -3.1 469,346 + +1.7 469,419 + +0.9 469,419 + -2.1 469,424 + -0.1 469,424 + +1.3 469,424 + -1.3 469,427 - +0.8 469,429 + +1.6 469,429 + +0.3 469,429 + -2.4 469,429 + +0.6 469,429 + -0.0 469,429 + +0.4 469,429 + -1.9 469,429 + -0.1 469,429 + +1.0 469,430 + -0.1 469,437 - +1.3 469,437 - +0.2 469,437 - -0.5 469,452 - -2.1 469,452 - -0.9 469,459 + -2.7 469,459 + -3.5 469,531 - -2.9 469,600 + Synpcc7942_0484 0.12 -0.5 469,657 - Synpcc7942_0484 0.16 -4.8 469,721 + Synpcc7942_0484 0.20 -2.9 469,807 + Synpcc7942_0484 0.26 -0.7 469,834 + Synpcc7942_0484 0.28 -1.8 469,883 + Synpcc7942_0484 0.31 -2.3 469,893 + Synpcc7942_0484 0.32 -2.4 470,144 + Synpcc7942_0484 0.49 -1.4 470,167 - Synpcc7942_0484 0.51 -2.8 470,302 - Synpcc7942_0484 0.60 -2.4 470,573 - Synpcc7942_0484 0.79 -3.0 470,599 + Synpcc7942_0484 0.81 -2.4 470,654 + Synpcc7942_0484 0.85 -3.7 470,719 - Synpcc7942_0484 0.89 -1.1 470,764 - -0.7 470,780 + -3.1 470,836 - -2.4 470,853 - -0.8 470,860 - +0.8 470,860 - +0.2 470,860 - -1.9 470,871 + +0.8 470,906 - -2.3 470,945 + -1.9 470,947 + +1.5 470,947 + -2.2 470,947 + -2.7
Or see this region's nucleotide sequence