Experiment: plate grown in LD 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt serS and nifU are separated by 43 nucleotides nifU and Synpcc7942_0451 are separated by 374 nucleotides
Synpcc7942_0449: serS - seryl-tRNA synthetase, at 438,675 to 440,006
serS
Synpcc7942_0450: nifU - putative NifU-like protein, at 440,050 to 440,295
nifU
Synpcc7942_0451: Synpcc7942_0451 - esterase, at 440,670 to 441,299
_0451
Position (kb) 440
441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 440.033 kb on + strand at 440.036 kb on - strand at 440.354 kb on + strand at 440.362 kb on - strand at 440.368 kb on - strand at 440.382 kb on + strand at 440.390 kb on + strand at 440.390 kb on - strand at 440.462 kb on + strand at 440.489 kb on - strand at 440.491 kb on + strand at 440.501 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.521 kb on + strand at 440.528 kb on + strand at 440.529 kb on - strand at 440.529 kb on - strand at 440.645 kb on + strand at 440.653 kb on + strand at 440.661 kb on - strand at 440.661 kb on - strand at 440.665 kb on + strand at 440.665 kb on + strand at 440.742 kb on - strand, within Synpcc7942_0451 at 440.742 kb on - strand, within Synpcc7942_0451 at 440.753 kb on + strand, within Synpcc7942_0451 at 440.759 kb on + strand, within Synpcc7942_0451 at 440.790 kb on + strand, within Synpcc7942_0451 at 440.798 kb on + strand, within Synpcc7942_0451 at 440.798 kb on - strand, within Synpcc7942_0451 at 440.798 kb on - strand, within Synpcc7942_0451 at 440.849 kb on + strand, within Synpcc7942_0451 at 440.860 kb on + strand at 440.860 kb on + strand, within Synpcc7942_0451 at 440.860 kb on + strand, within Synpcc7942_0451 at 440.864 kb on + strand, within Synpcc7942_0451 at 440.868 kb on - strand, within Synpcc7942_0451 at 440.868 kb on - strand, within Synpcc7942_0451 at 440.868 kb on - strand, within Synpcc7942_0451 at 440.878 kb on + strand, within Synpcc7942_0451 at 440.883 kb on + strand, within Synpcc7942_0451 at 440.886 kb on - strand, within Synpcc7942_0451 at 440.914 kb on - strand, within Synpcc7942_0451 at 440.964 kb on + strand, within Synpcc7942_0451 at 440.975 kb on - strand, within Synpcc7942_0451 at 441.020 kb on - strand, within Synpcc7942_0451 at 441.039 kb on - strand, within Synpcc7942_0451 at 441.049 kb on - strand, within Synpcc7942_0451 at 441.068 kb on + strand, within Synpcc7942_0451 at 441.074 kb on + strand, within Synpcc7942_0451 at 441.074 kb on + strand, within Synpcc7942_0451 at 441.082 kb on - strand, within Synpcc7942_0451 at 441.082 kb on - strand, within Synpcc7942_0451 at 441.106 kb on + strand, within Synpcc7942_0451 at 441.144 kb on + strand, within Synpcc7942_0451 at 441.194 kb on + strand, within Synpcc7942_0451 at 441.196 kb on + strand, within Synpcc7942_0451 at 441.202 kb on - strand, within Synpcc7942_0451 at 441.204 kb on - strand, within Synpcc7942_0451 at 441.204 kb on - strand, within Synpcc7942_0451 at 441.204 kb on - strand, within Synpcc7942_0451 at 441.209 kb on - strand, within Synpcc7942_0451 at 441.235 kb on + strand, within Synpcc7942_0451 at 441.272 kb on + strand at 441.280 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plate grown in LD 12:12 remove 440,033 + +1.2 440,036 - +0.0 440,354 + -1.9 440,362 - -0.2 440,368 - +0.6 440,382 + -0.1 440,390 + -1.6 440,390 - +1.4 440,462 + +0.3 440,489 - -2.1 440,491 + -0.2 440,501 + +1.3 440,521 + +0.6 440,521 + +0.9 440,521 + +0.8 440,528 + +0.5 440,529 - -0.5 440,529 - +0.8 440,645 + -3.2 440,653 + +0.3 440,661 - +0.1 440,661 - +0.7 440,665 + -1.9 440,665 + +0.2 440,742 - Synpcc7942_0451 0.11 +1.7 440,742 - Synpcc7942_0451 0.11 +0.4 440,753 + Synpcc7942_0451 0.13 +1.6 440,759 + Synpcc7942_0451 0.14 +0.1 440,790 + Synpcc7942_0451 0.19 +0.8 440,798 + Synpcc7942_0451 0.20 +0.1 440,798 - Synpcc7942_0451 0.20 +0.6 440,798 - Synpcc7942_0451 0.20 +0.5 440,849 + Synpcc7942_0451 0.28 -0.2 440,860 + -2.8 440,860 + Synpcc7942_0451 0.30 -0.5 440,860 + Synpcc7942_0451 0.30 +0.6 440,864 + Synpcc7942_0451 0.31 +1.7 440,868 - Synpcc7942_0451 0.31 -0.4 440,868 - Synpcc7942_0451 0.31 -0.4 440,868 - Synpcc7942_0451 0.31 -0.2 440,878 + Synpcc7942_0451 0.33 +0.2 440,883 + Synpcc7942_0451 0.34 -1.1 440,886 - Synpcc7942_0451 0.34 +1.2 440,914 - Synpcc7942_0451 0.39 +1.2 440,964 + Synpcc7942_0451 0.47 +0.2 440,975 - Synpcc7942_0451 0.48 +1.9 441,020 - Synpcc7942_0451 0.56 -3.3 441,039 - Synpcc7942_0451 0.59 -2.2 441,049 - Synpcc7942_0451 0.60 -3.5 441,068 + Synpcc7942_0451 0.63 -0.6 441,074 + Synpcc7942_0451 0.64 +1.4 441,074 + Synpcc7942_0451 0.64 +1.3 441,082 - Synpcc7942_0451 0.65 +0.8 441,082 - Synpcc7942_0451 0.65 +0.1 441,106 + Synpcc7942_0451 0.69 +0.9 441,144 + Synpcc7942_0451 0.75 +0.3 441,194 + Synpcc7942_0451 0.83 -0.2 441,196 + Synpcc7942_0451 0.83 -1.2 441,202 - Synpcc7942_0451 0.84 +0.1 441,204 - Synpcc7942_0451 0.85 +1.4 441,204 - Synpcc7942_0451 0.85 -0.3 441,204 - Synpcc7942_0451 0.85 -1.7 441,209 - Synpcc7942_0451 0.86 -0.2 441,235 + Synpcc7942_0451 0.90 -2.9 441,272 + -1.0 441,280 - +0.2
Or see this region's nucleotide sequence