Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0283

Experiment: plate grown in LD 12:12

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglyA and Synpcc7942_0283 are separated by 196 nucleotidesSynpcc7942_0283 and ccmK3 are separated by 77 nucleotidesccmK3 and ccmK4 are separated by 44 nucleotidesccmK4 and Synpcc7942_0286 are separated by 84 nucleotides Synpcc7942_0282: glyA - serine hydroxymethyltransferase, at 278,139 to 279,422 glyA Synpcc7942_0283: Synpcc7942_0283 - Dihydrouridine synthase TIM-barrel protein nifR3, at 279,619 to 280,623 _0283 Synpcc7942_0284: ccmK3 - carbon dioxide concentrating mechanism protein CcmK, at 280,701 to 281,009 ccmK3 Synpcc7942_0285: ccmK4 - carbon dioxide concentrating mechanism protein CcmK, at 281,054 to 281,395 ccmK4 Synpcc7942_0286: Synpcc7942_0286 - hypothetical protein, at 281,480 to 281,842 _0286 Position (kb) 279 280 281Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 279.441 kb on + strandat 279.534 kb on + strandat 279.534 kb on + strandat 279.591 kb on + strandat 279.599 kb on - strandat 279.599 kb on - strandat 279.599 kb on - strandat 279.615 kb on + strandat 279.615 kb on + strandat 279.623 kb on - strandat 279.627 kb on + strandat 279.635 kb on - strandat 279.635 kb on - strandat 279.635 kb on - strandat 279.635 kb on - strandat 279.635 kb on - strandat 279.650 kb on + strandat 279.662 kb on + strandat 279.668 kb on - strandat 279.672 kb on + strandat 279.688 kb on - strandat 279.702 kb on + strandat 279.702 kb on + strandat 279.702 kb on + strandat 279.710 kb on - strandat 279.710 kb on - strandat 279.710 kb on - strandat 279.710 kb on - strandat 279.736 kb on + strand, within Synpcc7942_0283at 279.736 kb on + strand, within Synpcc7942_0283at 279.738 kb on - strand, within Synpcc7942_0283at 279.754 kb on + strand, within Synpcc7942_0283at 279.773 kb on + strand, within Synpcc7942_0283at 279.781 kb on - strand, within Synpcc7942_0283at 279.782 kb on + strand, within Synpcc7942_0283at 279.790 kb on - strand, within Synpcc7942_0283at 279.790 kb on - strand, within Synpcc7942_0283at 279.803 kb on + strand, within Synpcc7942_0283at 279.812 kb on + strand, within Synpcc7942_0283at 279.831 kb on + strand, within Synpcc7942_0283at 279.839 kb on - strand, within Synpcc7942_0283at 279.868 kb on + strand, within Synpcc7942_0283at 279.893 kb on + strand, within Synpcc7942_0283at 279.927 kb on - strand, within Synpcc7942_0283at 279.950 kb on - strand, within Synpcc7942_0283at 279.971 kb on - strand, within Synpcc7942_0283at 279.976 kb on + strand, within Synpcc7942_0283at 280.013 kb on + strand, within Synpcc7942_0283at 280.021 kb on - strand, within Synpcc7942_0283at 280.023 kb on + strand, within Synpcc7942_0283at 280.023 kb on + strand, within Synpcc7942_0283at 280.023 kb on + strand, within Synpcc7942_0283at 280.028 kb on + strand, within Synpcc7942_0283at 280.031 kb on - strand, within Synpcc7942_0283at 280.041 kb on - strand, within Synpcc7942_0283at 280.043 kb on + strand, within Synpcc7942_0283at 280.052 kb on + strand, within Synpcc7942_0283at 280.052 kb on + strand, within Synpcc7942_0283at 280.052 kb on + strand, within Synpcc7942_0283at 280.060 kb on - strand, within Synpcc7942_0283at 280.064 kb on - strand, within Synpcc7942_0283at 280.075 kb on + strand, within Synpcc7942_0283at 280.075 kb on + strand, within Synpcc7942_0283at 280.075 kb on + strand, within Synpcc7942_0283at 280.077 kb on + strandat 280.092 kb on + strand, within Synpcc7942_0283at 280.114 kb on - strand, within Synpcc7942_0283at 280.116 kb on + strand, within Synpcc7942_0283at 280.125 kb on + strand, within Synpcc7942_0283at 280.134 kb on - strand, within Synpcc7942_0283at 280.134 kb on - strand, within Synpcc7942_0283at 280.134 kb on - strand, within Synpcc7942_0283at 280.159 kb on + strand, within Synpcc7942_0283at 280.159 kb on + strand, within Synpcc7942_0283at 280.168 kb on - strand, within Synpcc7942_0283at 280.205 kb on - strand, within Synpcc7942_0283at 280.216 kb on + strand, within Synpcc7942_0283at 280.216 kb on + strand, within Synpcc7942_0283at 280.229 kb on - strand, within Synpcc7942_0283at 280.266 kb on + strand, within Synpcc7942_0283at 280.271 kb on - strand, within Synpcc7942_0283at 280.276 kb on - strand, within Synpcc7942_0283at 280.283 kb on + strand, within Synpcc7942_0283at 280.283 kb on + strand, within Synpcc7942_0283at 280.291 kb on - strand, within Synpcc7942_0283at 280.295 kb on - strand, within Synpcc7942_0283at 280.296 kb on - strand, within Synpcc7942_0283at 280.296 kb on - strand, within Synpcc7942_0283at 280.342 kb on - strand, within Synpcc7942_0283at 280.363 kb on + strand, within Synpcc7942_0283at 280.473 kb on - strand, within Synpcc7942_0283at 280.541 kb on - strandat 280.541 kb on - strandat 280.556 kb on - strandat 280.566 kb on + strandat 280.576 kb on + strandat 280.600 kb on + strandat 280.968 kb on - strand, within ccmK3at 281.396 kb on + strandat 281.396 kb on + strandat 281.449 kb on + strandat 281.506 kb on + strandat 281.567 kb on + strand, within Synpcc7942_0286at 281.567 kb on + strand, within Synpcc7942_0286

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Per-strain Table

Position Strand Gene LocusTag Fraction plate grown in LD 12:12
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279,441 + -2.7
279,534 + -2.5
279,534 + -2.5
279,591 + +1.0
279,599 - +0.5
279,599 - -0.4
279,599 - -0.2
279,615 + -2.4
279,615 + -0.5
279,623 - -0.5
279,627 + -0.7
279,635 - +0.1
279,635 - -2.5
279,635 - +0.7
279,635 - -0.7
279,635 - +0.5
279,650 + -0.5
279,662 + -1.6
279,668 - -1.1
279,672 + +1.4
279,688 - +1.4
279,702 + -0.2
279,702 + +0.8
279,702 + +1.1
279,710 - -0.9
279,710 - +0.3
279,710 - -0.5
279,710 - -0.2
279,736 + Synpcc7942_0283 0.12 +0.4
279,736 + Synpcc7942_0283 0.12 -0.0
279,738 - Synpcc7942_0283 0.12 -2.4
279,754 + Synpcc7942_0283 0.13 +0.5
279,773 + Synpcc7942_0283 0.15 +0.8
279,781 - Synpcc7942_0283 0.16 +0.7
279,782 + Synpcc7942_0283 0.16 -0.5
279,790 - Synpcc7942_0283 0.17 +0.2
279,790 - Synpcc7942_0283 0.17 +1.0
279,803 + Synpcc7942_0283 0.18 -1.5
279,812 + Synpcc7942_0283 0.19 +1.6
279,831 + Synpcc7942_0283 0.21 +1.3
279,839 - Synpcc7942_0283 0.22 +0.2
279,868 + Synpcc7942_0283 0.25 +0.4
279,893 + Synpcc7942_0283 0.27 +2.9
279,927 - Synpcc7942_0283 0.31 +0.8
279,950 - Synpcc7942_0283 0.33 -1.0
279,971 - Synpcc7942_0283 0.35 -1.7
279,976 + Synpcc7942_0283 0.36 -2.7
280,013 + Synpcc7942_0283 0.39 +0.5
280,021 - Synpcc7942_0283 0.40 +1.8
280,023 + Synpcc7942_0283 0.40 +0.2
280,023 + Synpcc7942_0283 0.40 +2.1
280,023 + Synpcc7942_0283 0.40 +1.8
280,028 + Synpcc7942_0283 0.41 +0.3
280,031 - Synpcc7942_0283 0.41 -0.1
280,041 - Synpcc7942_0283 0.42 +1.3
280,043 + Synpcc7942_0283 0.42 +1.0
280,052 + Synpcc7942_0283 0.43 +0.4
280,052 + Synpcc7942_0283 0.43 +0.4
280,052 + Synpcc7942_0283 0.43 +1.6
280,060 - Synpcc7942_0283 0.44 +0.8
280,064 - Synpcc7942_0283 0.44 +0.8
280,075 + Synpcc7942_0283 0.45 +0.0
280,075 + Synpcc7942_0283 0.45 +0.7
280,075 + Synpcc7942_0283 0.45 +1.2
280,077 + -2.2
280,092 + Synpcc7942_0283 0.47 +0.2
280,114 - Synpcc7942_0283 0.49 -0.4
280,116 + Synpcc7942_0283 0.49 -1.4
280,125 + Synpcc7942_0283 0.50 -1.1
280,134 - Synpcc7942_0283 0.51 -0.9
280,134 - Synpcc7942_0283 0.51 +0.5
280,134 - Synpcc7942_0283 0.51 -0.4
280,159 + Synpcc7942_0283 0.54 +0.2
280,159 + Synpcc7942_0283 0.54 +1.0
280,168 - Synpcc7942_0283 0.55 +0.6
280,205 - Synpcc7942_0283 0.58 +0.1
280,216 + Synpcc7942_0283 0.59 -2.1
280,216 + Synpcc7942_0283 0.59 +0.3
280,229 - Synpcc7942_0283 0.61 +0.3
280,266 + Synpcc7942_0283 0.64 -0.3
280,271 - Synpcc7942_0283 0.65 -0.6
280,276 - Synpcc7942_0283 0.65 +0.6
280,283 + Synpcc7942_0283 0.66 -3.2
280,283 + Synpcc7942_0283 0.66 +0.3
280,291 - Synpcc7942_0283 0.67 -0.3
280,295 - Synpcc7942_0283 0.67 +0.8
280,296 - Synpcc7942_0283 0.67 -0.0
280,296 - Synpcc7942_0283 0.67 +1.2
280,342 - Synpcc7942_0283 0.72 +0.2
280,363 + Synpcc7942_0283 0.74 +0.8
280,473 - Synpcc7942_0283 0.85 +0.6
280,541 - +0.4
280,541 - -0.8
280,556 - -0.1
280,566 + +0.2
280,576 + +0.0
280,600 + +0.0
280,968 - ccmK3 Synpcc7942_0284 0.86 -2.2
281,396 + -0.8
281,396 + +0.4
281,449 + +0.6
281,506 + +0.7
281,567 + Synpcc7942_0286 0.24 -0.2
281,567 + Synpcc7942_0286 0.24 -0.3

Or see this region's nucleotide sequence