Experiment: plate grown in LD 12:12
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0108 and Synpcc7942_0109 are separated by 60 nucleotides Synpcc7942_0109 and Synpcc7942_0110 are separated by 6 nucleotides Synpcc7942_0110 and dnaK are separated by 64 nucleotides
Synpcc7942_0108: Synpcc7942_0108 - sulfiredoxin, at 108,556 to 108,816
_0108
Synpcc7942_0109: Synpcc7942_0109 - DNA-binding ferritin-like protein (oxidative damage protectant)-like, at 108,877 to 109,383
_0109
Synpcc7942_0110: Synpcc7942_0110 - transcriptional regulator, XRE family, at 109,390 to 109,947
_0110
Synpcc7942_0111: dnaK - DnaK protein-like, at 110,012 to 111,607
dnaK
Position (kb) 109
110 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 108.408 kb on + strand at 108.411 kb on - strand at 108.411 kb on - strand at 108.436 kb on + strand at 108.436 kb on + strand at 108.436 kb on + strand at 108.441 kb on + strand at 108.444 kb on - strand at 108.444 kb on - strand at 108.444 kb on - strand at 108.444 kb on - strand at 108.444 kb on - strand at 108.444 kb on - strand at 108.444 kb on - strand at 108.449 kb on - strand at 108.449 kb on - strand at 108.452 kb on + strand at 108.452 kb on + strand at 108.460 kb on - strand at 108.460 kb on - strand at 108.462 kb on - strand at 108.463 kb on - strand at 108.463 kb on - strand at 108.465 kb on + strand at 108.473 kb on - strand at 108.473 kb on - strand at 108.473 kb on - strand at 108.571 kb on - strand at 108.571 kb on - strand at 108.573 kb on - strand at 108.578 kb on - strand at 108.603 kb on + strand, within Synpcc7942_0108 at 108.603 kb on - strand, within Synpcc7942_0108 at 108.608 kb on + strand, within Synpcc7942_0108 at 108.611 kb on - strand, within Synpcc7942_0108 at 108.625 kb on + strand, within Synpcc7942_0108 at 108.625 kb on + strand, within Synpcc7942_0108 at 108.638 kb on - strand, within Synpcc7942_0108 at 108.650 kb on + strand, within Synpcc7942_0108 at 108.665 kb on - strand, within Synpcc7942_0108 at 108.672 kb on + strand, within Synpcc7942_0108 at 108.750 kb on - strand, within Synpcc7942_0108 at 108.793 kb on + strand at 108.793 kb on + strand at 108.801 kb on - strand at 108.801 kb on - strand at 108.810 kb on + strand at 108.829 kb on + strand at 108.829 kb on + strand at 108.837 kb on - strand at 108.837 kb on - strand at 108.837 kb on - strand at 108.837 kb on - strand at 108.842 kb on + strand at 108.844 kb on + strand at 108.860 kb on - strand at 108.873 kb on - strand at 108.933 kb on + strand, within Synpcc7942_0109 at 108.953 kb on + strand, within Synpcc7942_0109 at 108.978 kb on + strand, within Synpcc7942_0109 at 108.983 kb on + strand, within Synpcc7942_0109 at 108.987 kb on + strand, within Synpcc7942_0109 at 108.989 kb on + strand, within Synpcc7942_0109 at 108.989 kb on - strand, within Synpcc7942_0109 at 108.995 kb on - strand, within Synpcc7942_0109 at 108.997 kb on - strand, within Synpcc7942_0109 at 109.044 kb on + strand, within Synpcc7942_0109 at 109.045 kb on - strand, within Synpcc7942_0109 at 109.050 kb on - strand, within Synpcc7942_0109 at 109.052 kb on - strand, within Synpcc7942_0109 at 109.059 kb on - strand, within Synpcc7942_0109 at 109.089 kb on + strand, within Synpcc7942_0109 at 109.152 kb on - strand, within Synpcc7942_0109 at 109.158 kb on - strand, within Synpcc7942_0109 at 109.227 kb on - strand at 109.227 kb on - strand, within Synpcc7942_0109 at 109.295 kb on + strand, within Synpcc7942_0109 at 109.303 kb on - strand, within Synpcc7942_0109 at 109.314 kb on + strand, within Synpcc7942_0109 at 109.359 kb on + strand at 109.362 kb on + strand at 109.370 kb on - strand at 109.418 kb on - strand at 109.431 kb on + strand at 109.436 kb on - strand at 109.466 kb on + strand, within Synpcc7942_0110 at 109.477 kb on + strand, within Synpcc7942_0110 at 109.485 kb on - strand, within Synpcc7942_0110 at 109.498 kb on + strand, within Synpcc7942_0110 at 109.498 kb on + strand, within Synpcc7942_0110 at 109.498 kb on + strand, within Synpcc7942_0110 at 109.498 kb on + strand, within Synpcc7942_0110 at 109.498 kb on + strand, within Synpcc7942_0110 at 109.498 kb on + strand, within Synpcc7942_0110 at 109.498 kb on + strand, within Synpcc7942_0110 at 109.498 kb on + strand, within Synpcc7942_0110 at 109.498 kb on + strand, within Synpcc7942_0110 at 109.498 kb on + strand, within Synpcc7942_0110 at 109.506 kb on - strand, within Synpcc7942_0110 at 109.506 kb on - strand, within Synpcc7942_0110 at 109.506 kb on - strand, within Synpcc7942_0110 at 109.506 kb on - strand, within Synpcc7942_0110 at 109.506 kb on - strand, within Synpcc7942_0110 at 109.506 kb on - strand, within Synpcc7942_0110 at 109.506 kb on - strand, within Synpcc7942_0110 at 109.506 kb on - strand, within Synpcc7942_0110 at 109.506 kb on - strand, within Synpcc7942_0110 at 109.506 kb on - strand, within Synpcc7942_0110 at 109.552 kb on - strand, within Synpcc7942_0110 at 109.556 kb on - strand, within Synpcc7942_0110 at 109.606 kb on - strand, within Synpcc7942_0110 at 109.606 kb on - strand, within Synpcc7942_0110 at 109.634 kb on + strand, within Synpcc7942_0110 at 109.648 kb on + strand, within Synpcc7942_0110 at 109.648 kb on + strand, within Synpcc7942_0110 at 109.648 kb on + strand, within Synpcc7942_0110 at 109.666 kb on - strand, within Synpcc7942_0110 at 109.666 kb on - strand, within Synpcc7942_0110 at 109.680 kb on - strand, within Synpcc7942_0110 at 109.691 kb on - strand, within Synpcc7942_0110 at 109.710 kb on - strand, within Synpcc7942_0110 at 109.710 kb on - strand, within Synpcc7942_0110 at 109.735 kb on + strand, within Synpcc7942_0110 at 109.764 kb on + strand, within Synpcc7942_0110 at 109.772 kb on - strand, within Synpcc7942_0110 at 109.790 kb on + strand at 109.791 kb on - strand, within Synpcc7942_0110 at 109.810 kb on + strand, within Synpcc7942_0110 at 109.812 kb on - strand, within Synpcc7942_0110 at 109.817 kb on + strand, within Synpcc7942_0110 at 109.817 kb on + strand, within Synpcc7942_0110 at 109.825 kb on - strand, within Synpcc7942_0110 at 109.854 kb on + strand, within Synpcc7942_0110 at 109.856 kb on - strand, within Synpcc7942_0110 at 109.857 kb on - strand, within Synpcc7942_0110 at 109.867 kb on - strand, within Synpcc7942_0110 at 109.910 kb on + strand at 109.917 kb on - strand at 109.931 kb on - strand at 109.931 kb on - strand at 109.936 kb on + strand at 109.945 kb on + strand at 109.963 kb on + strand at 109.972 kb on - strand at 110.038 kb on + strand at 110.046 kb on - strand at 110.046 kb on - strand at 110.046 kb on - strand at 110.048 kb on - strand at 110.067 kb on - strand at 110.067 kb on - strand at 110.120 kb on + strand at 110.127 kb on + strand at 110.139 kb on + strand at 110.189 kb on + strand, within dnaK at 110.189 kb on + strand, within dnaK at 110.190 kb on + strand, within dnaK at 110.198 kb on - strand, within dnaK at 110.206 kb on - strand, within dnaK at 110.218 kb on - strand, within dnaK at 110.235 kb on - strand, within dnaK at 110.255 kb on - strand, within dnaK at 110.312 kb on + strand, within dnaK at 110.313 kb on + strand, within dnaK at 110.321 kb on - strand, within dnaK at 110.321 kb on - strand, within dnaK at 110.321 kb on - strand, within dnaK at 110.356 kb on - strand, within dnaK at 110.366 kb on - strand, within dnaK at 110.371 kb on - strand, within dnaK at 110.415 kb on + strand, within dnaK at 110.416 kb on - strand, within dnaK at 110.423 kb on - strand, within dnaK at 110.439 kb on - strand, within dnaK at 110.450 kb on + strand, within dnaK at 110.450 kb on + strand, within dnaK at 110.450 kb on + strand, within dnaK at 110.450 kb on + strand, within dnaK at 110.450 kb on + strand, within dnaK at 110.450 kb on + strand, within dnaK at 110.455 kb on + strand, within dnaK at 110.458 kb on - strand, within dnaK at 110.458 kb on - strand, within dnaK at 110.458 kb on - strand, within dnaK at 110.458 kb on - strand, within dnaK at 110.461 kb on - strand, within dnaK at 110.463 kb on - strand, within dnaK at 110.504 kb on + strand, within dnaK at 110.509 kb on + strand, within dnaK at 110.509 kb on + strand, within dnaK at 110.517 kb on - strand, within dnaK at 110.517 kb on - strand, within dnaK at 110.527 kb on - strand, within dnaK at 110.540 kb on - strand, within dnaK at 110.594 kb on - strand, within dnaK at 110.599 kb on - strand, within dnaK at 110.618 kb on + strand, within dnaK at 110.698 kb on + strand, within dnaK at 110.698 kb on + strand, within dnaK at 110.747 kb on + strand, within dnaK at 110.775 kb on - strand, within dnaK at 110.785 kb on - strand, within dnaK at 110.789 kb on + strand, within dnaK at 110.802 kb on + strand, within dnaK at 110.822 kb on - strand, within dnaK at 110.832 kb on - strand, within dnaK at 110.843 kb on - strand, within dnaK at 110.843 kb on - strand, within dnaK at 110.843 kb on - strand, within dnaK at 110.843 kb on - strand, within dnaK at 110.846 kb on + strand, within dnaK at 110.873 kb on + strand, within dnaK at 110.880 kb on + strand, within dnaK at 110.888 kb on - strand, within dnaK at 110.888 kb on - strand, within dnaK
Per-strain Table
Position Strand Gene LocusTag Fraction plate grown in LD 12:12 remove 108,408 + +1.3 108,411 - -0.2 108,411 - -2.8 108,436 + -1.8 108,436 + +0.1 108,436 + +1.0 108,441 + +0.8 108,444 - +0.7 108,444 - +1.4 108,444 - -3.3 108,444 - +0.9 108,444 - +1.5 108,444 - +0.3 108,444 - -2.1 108,449 - +0.6 108,449 - -2.1 108,452 + -0.1 108,452 + +0.4 108,460 - +1.4 108,460 - -4.3 108,462 - -0.3 108,463 - -3.1 108,463 - +0.9 108,465 + -2.6 108,473 - +1.5 108,473 - -2.4 108,473 - -0.2 108,571 - -0.5 108,571 - -1.3 108,573 - +0.2 108,578 - +0.2 108,603 + Synpcc7942_0108 0.18 -0.6 108,603 - Synpcc7942_0108 0.18 +1.3 108,608 + Synpcc7942_0108 0.20 +0.9 108,611 - Synpcc7942_0108 0.21 +1.3 108,625 + Synpcc7942_0108 0.26 +0.8 108,625 + Synpcc7942_0108 0.26 +0.1 108,638 - Synpcc7942_0108 0.31 -0.6 108,650 + Synpcc7942_0108 0.36 +1.2 108,665 - Synpcc7942_0108 0.42 +0.2 108,672 + Synpcc7942_0108 0.44 +2.4 108,750 - Synpcc7942_0108 0.74 +0.2 108,793 + +0.8 108,793 + -1.2 108,801 - +0.3 108,801 - -1.3 108,810 + -1.1 108,829 + +0.4 108,829 + +1.1 108,837 - -1.1 108,837 - -0.2 108,837 - +0.2 108,837 - +0.2 108,842 + -2.2 108,844 + -1.4 108,860 - -1.6 108,873 - -1.6 108,933 + Synpcc7942_0109 0.11 -2.4 108,953 + Synpcc7942_0109 0.15 -3.0 108,978 + Synpcc7942_0109 0.20 -0.1 108,983 + Synpcc7942_0109 0.21 -2.6 108,987 + Synpcc7942_0109 0.22 -5.0 108,989 + Synpcc7942_0109 0.22 +0.1 108,989 - Synpcc7942_0109 0.22 -1.3 108,995 - Synpcc7942_0109 0.23 -1.6 108,997 - Synpcc7942_0109 0.24 -3.5 109,044 + Synpcc7942_0109 0.33 -0.2 109,045 - Synpcc7942_0109 0.33 -4.5 109,050 - Synpcc7942_0109 0.34 -0.1 109,052 - Synpcc7942_0109 0.35 -4.1 109,059 - Synpcc7942_0109 0.36 -2.1 109,089 + Synpcc7942_0109 0.42 -4.0 109,152 - Synpcc7942_0109 0.54 -3.7 109,158 - Synpcc7942_0109 0.55 -2.2 109,227 - -2.2 109,227 - Synpcc7942_0109 0.69 -3.4 109,295 + Synpcc7942_0109 0.82 -4.7 109,303 - Synpcc7942_0109 0.84 -0.1 109,314 + Synpcc7942_0109 0.86 -0.6 109,359 + -2.5 109,362 + -4.9 109,370 - -3.2 109,418 - +0.4 109,431 + +0.3 109,436 - -0.0 109,466 + Synpcc7942_0110 0.14 +0.5 109,477 + Synpcc7942_0110 0.16 +0.4 109,485 - Synpcc7942_0110 0.17 +0.6 109,498 + Synpcc7942_0110 0.19 -0.7 109,498 + Synpcc7942_0110 0.19 +0.7 109,498 + Synpcc7942_0110 0.19 +2.6 109,498 + Synpcc7942_0110 0.19 +1.2 109,498 + Synpcc7942_0110 0.19 -0.3 109,498 + Synpcc7942_0110 0.19 -0.9 109,498 + Synpcc7942_0110 0.19 -0.2 109,498 + Synpcc7942_0110 0.19 -2.5 109,498 + Synpcc7942_0110 0.19 +0.9 109,498 + Synpcc7942_0110 0.19 +0.1 109,506 - Synpcc7942_0110 0.21 +0.3 109,506 - Synpcc7942_0110 0.21 -0.6 109,506 - Synpcc7942_0110 0.21 -2.2 109,506 - Synpcc7942_0110 0.21 +0.9 109,506 - Synpcc7942_0110 0.21 +1.0 109,506 - Synpcc7942_0110 0.21 -0.1 109,506 - Synpcc7942_0110 0.21 +0.0 109,506 - Synpcc7942_0110 0.21 -3.0 109,506 - Synpcc7942_0110 0.21 -3.6 109,506 - Synpcc7942_0110 0.21 +0.2 109,552 - Synpcc7942_0110 0.29 -2.5 109,556 - Synpcc7942_0110 0.30 -3.0 109,606 - Synpcc7942_0110 0.39 -0.9 109,606 - Synpcc7942_0110 0.39 +0.7 109,634 + Synpcc7942_0110 0.44 +0.5 109,648 + Synpcc7942_0110 0.46 +0.1 109,648 + Synpcc7942_0110 0.46 -0.9 109,648 + Synpcc7942_0110 0.46 +0.9 109,666 - Synpcc7942_0110 0.49 -0.2 109,666 - Synpcc7942_0110 0.49 +0.7 109,680 - Synpcc7942_0110 0.52 +2.6 109,691 - Synpcc7942_0110 0.54 -0.9 109,710 - Synpcc7942_0110 0.57 -2.4 109,710 - Synpcc7942_0110 0.57 -2.4 109,735 + Synpcc7942_0110 0.62 -2.6 109,764 + Synpcc7942_0110 0.67 -0.9 109,772 - Synpcc7942_0110 0.68 -0.4 109,790 + +3.4 109,791 - Synpcc7942_0110 0.72 +0.2 109,810 + Synpcc7942_0110 0.75 +0.5 109,812 - Synpcc7942_0110 0.76 -0.3 109,817 + Synpcc7942_0110 0.77 +0.9 109,817 + Synpcc7942_0110 0.77 +0.1 109,825 - Synpcc7942_0110 0.78 +0.9 109,854 + Synpcc7942_0110 0.83 +0.4 109,856 - Synpcc7942_0110 0.84 +0.3 109,857 - Synpcc7942_0110 0.84 -0.1 109,867 - Synpcc7942_0110 0.85 -1.0 109,910 + +0.1 109,917 - -0.6 109,931 - +1.6 109,931 - +0.5 109,936 + -0.5 109,945 + -0.7 109,963 + -0.6 109,972 - -0.1 110,038 + -0.4 110,046 - +1.2 110,046 - -0.2 110,046 - +0.3 110,048 - -1.0 110,067 - +0.2 110,067 - -2.8 110,120 + +0.2 110,127 + +0.4 110,139 + +1.2 110,189 + dnaK Synpcc7942_0111 0.11 +0.4 110,189 + dnaK Synpcc7942_0111 0.11 +0.7 110,190 + dnaK Synpcc7942_0111 0.11 +1.1 110,198 - dnaK Synpcc7942_0111 0.12 +0.3 110,206 - dnaK Synpcc7942_0111 0.12 +0.2 110,218 - dnaK Synpcc7942_0111 0.13 -1.1 110,235 - dnaK Synpcc7942_0111 0.14 +0.7 110,255 - dnaK Synpcc7942_0111 0.15 -0.5 110,312 + dnaK Synpcc7942_0111 0.19 +0.6 110,313 + dnaK Synpcc7942_0111 0.19 +1.2 110,321 - dnaK Synpcc7942_0111 0.19 -2.5 110,321 - dnaK Synpcc7942_0111 0.19 +0.9 110,321 - dnaK Synpcc7942_0111 0.19 +0.7 110,356 - dnaK Synpcc7942_0111 0.22 +0.2 110,366 - dnaK Synpcc7942_0111 0.22 +1.1 110,371 - dnaK Synpcc7942_0111 0.22 -0.7 110,415 + dnaK Synpcc7942_0111 0.25 -0.8 110,416 - dnaK Synpcc7942_0111 0.25 +0.1 110,423 - dnaK Synpcc7942_0111 0.26 +0.2 110,439 - dnaK Synpcc7942_0111 0.27 -0.2 110,450 + dnaK Synpcc7942_0111 0.27 +1.4 110,450 + dnaK Synpcc7942_0111 0.27 +1.9 110,450 + dnaK Synpcc7942_0111 0.27 +2.4 110,450 + dnaK Synpcc7942_0111 0.27 +0.4 110,450 + dnaK Synpcc7942_0111 0.27 -0.6 110,450 + dnaK Synpcc7942_0111 0.27 -1.5 110,455 + dnaK Synpcc7942_0111 0.28 -0.2 110,458 - dnaK Synpcc7942_0111 0.28 -0.5 110,458 - dnaK Synpcc7942_0111 0.28 -0.6 110,458 - dnaK Synpcc7942_0111 0.28 +1.2 110,458 - dnaK Synpcc7942_0111 0.28 +0.1 110,461 - dnaK Synpcc7942_0111 0.28 +0.2 110,463 - dnaK Synpcc7942_0111 0.28 +0.6 110,504 + dnaK Synpcc7942_0111 0.31 +0.6 110,509 + dnaK Synpcc7942_0111 0.31 +0.0 110,509 + dnaK Synpcc7942_0111 0.31 +0.3 110,517 - dnaK Synpcc7942_0111 0.32 +2.5 110,517 - dnaK Synpcc7942_0111 0.32 -2.4 110,527 - dnaK Synpcc7942_0111 0.32 +1.5 110,540 - dnaK Synpcc7942_0111 0.33 -2.4 110,594 - dnaK Synpcc7942_0111 0.36 -1.8 110,599 - dnaK Synpcc7942_0111 0.37 -0.2 110,618 + dnaK Synpcc7942_0111 0.38 +0.9 110,698 + dnaK Synpcc7942_0111 0.43 -0.8 110,698 + dnaK Synpcc7942_0111 0.43 +1.1 110,747 + dnaK Synpcc7942_0111 0.46 -0.4 110,775 - dnaK Synpcc7942_0111 0.48 +0.7 110,785 - dnaK Synpcc7942_0111 0.48 -3.2 110,789 + dnaK Synpcc7942_0111 0.49 -1.1 110,802 + dnaK Synpcc7942_0111 0.49 -0.5 110,822 - dnaK Synpcc7942_0111 0.51 -0.6 110,832 - dnaK Synpcc7942_0111 0.51 +0.7 110,843 - dnaK Synpcc7942_0111 0.52 -0.1 110,843 - dnaK Synpcc7942_0111 0.52 -0.8 110,843 - dnaK Synpcc7942_0111 0.52 -1.6 110,843 - dnaK Synpcc7942_0111 0.52 +0.2 110,846 + dnaK Synpcc7942_0111 0.52 +0.4 110,873 + dnaK Synpcc7942_0111 0.54 -1.5 110,880 + dnaK Synpcc7942_0111 0.54 +0.1 110,888 - dnaK Synpcc7942_0111 0.55 +1.9 110,888 - dnaK Synpcc7942_0111 0.55 -0.3
Or see this region's nucleotide sequence