Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_620 and Pf6N2E2_621 overlap by 4 nucleotides Pf6N2E2_621 and Pf6N2E2_622 overlap by 4 nucleotides
Pf6N2E2_620 - BatD, at 705,629 to 707,266
_620
Pf6N2E2_621 - TPR domain protein in aerotolerance operon, at 707,263 to 708,999
_621
Pf6N2E2_622 - BatA (Bacteroides aerotolerance operon), at 708,996 to 710,075
_622
Position (kb) 707
708
709 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 706.488 kb on + strand, within Pf6N2E2_620 at 706.653 kb on + strand, within Pf6N2E2_620 at 706.653 kb on + strand, within Pf6N2E2_620 at 706.654 kb on - strand, within Pf6N2E2_620 at 706.654 kb on - strand, within Pf6N2E2_620 at 706.710 kb on + strand, within Pf6N2E2_620 at 706.782 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.836 kb on + strand, within Pf6N2E2_620 at 706.837 kb on - strand, within Pf6N2E2_620 at 706.837 kb on - strand, within Pf6N2E2_620 at 706.837 kb on - strand, within Pf6N2E2_620 at 706.837 kb on - strand, within Pf6N2E2_620 at 707.247 kb on + strand at 707.247 kb on + strand at 707.248 kb on - strand at 707.248 kb on - strand at 707.313 kb on + strand at 707.458 kb on + strand, within Pf6N2E2_621 at 707.458 kb on + strand, within Pf6N2E2_621 at 707.458 kb on + strand, within Pf6N2E2_621 at 707.459 kb on - strand, within Pf6N2E2_621 at 707.723 kb on + strand, within Pf6N2E2_621 at 707.723 kb on + strand, within Pf6N2E2_621 at 707.723 kb on + strand, within Pf6N2E2_621 at 707.723 kb on + strand, within Pf6N2E2_621 at 707.780 kb on + strand, within Pf6N2E2_621 at 707.780 kb on + strand, within Pf6N2E2_621 at 707.781 kb on - strand, within Pf6N2E2_621 at 707.995 kb on + strand, within Pf6N2E2_621 at 707.995 kb on + strand, within Pf6N2E2_621 at 707.996 kb on - strand, within Pf6N2E2_621 at 708.275 kb on + strand, within Pf6N2E2_621 at 708.567 kb on + strand, within Pf6N2E2_621 at 708.634 kb on + strand, within Pf6N2E2_621 at 708.634 kb on + strand, within Pf6N2E2_621 at 708.635 kb on - strand, within Pf6N2E2_621 at 708.861 kb on + strand at 708.862 kb on - strand at 708.862 kb on - strand at 708.950 kb on - strand at 708.950 kb on - strand at 708.958 kb on + strand at 708.959 kb on - strand at 709.165 kb on + strand, within Pf6N2E2_622 at 709.166 kb on - strand, within Pf6N2E2_622 at 709.245 kb on + strand, within Pf6N2E2_622 at 709.639 kb on + strand, within Pf6N2E2_622 at 709.639 kb on + strand, within Pf6N2E2_622 at 709.640 kb on - strand, within Pf6N2E2_622
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 706,488 + Pf6N2E2_620 0.52 -0.7 706,653 + Pf6N2E2_620 0.63 -0.8 706,653 + Pf6N2E2_620 0.63 -1.5 706,654 - Pf6N2E2_620 0.63 -0.9 706,654 - Pf6N2E2_620 0.63 -1.6 706,710 + Pf6N2E2_620 0.66 -0.8 706,782 + Pf6N2E2_620 0.70 -2.0 706,836 + Pf6N2E2_620 0.74 +0.4 706,836 + Pf6N2E2_620 0.74 -2.5 706,836 + Pf6N2E2_620 0.74 -2.1 706,836 + Pf6N2E2_620 0.74 +0.1 706,836 + Pf6N2E2_620 0.74 -0.3 706,836 + Pf6N2E2_620 0.74 -0.0 706,836 + Pf6N2E2_620 0.74 -0.5 706,836 + Pf6N2E2_620 0.74 -0.2 706,836 + Pf6N2E2_620 0.74 -0.1 706,836 + Pf6N2E2_620 0.74 -0.9 706,837 - Pf6N2E2_620 0.74 -2.7 706,837 - Pf6N2E2_620 0.74 -0.5 706,837 - Pf6N2E2_620 0.74 -1.5 706,837 - Pf6N2E2_620 0.74 -2.8 707,247 + -1.8 707,247 + -0.7 707,248 - -0.3 707,248 - +0.5 707,313 + -1.0 707,458 + Pf6N2E2_621 0.11 -1.2 707,458 + Pf6N2E2_621 0.11 -1.3 707,458 + Pf6N2E2_621 0.11 -1.3 707,459 - Pf6N2E2_621 0.11 -1.6 707,723 + Pf6N2E2_621 0.26 -1.5 707,723 + Pf6N2E2_621 0.26 -0.7 707,723 + Pf6N2E2_621 0.26 -0.5 707,723 + Pf6N2E2_621 0.26 -1.2 707,780 + Pf6N2E2_621 0.30 -1.7 707,780 + Pf6N2E2_621 0.30 -2.0 707,781 - Pf6N2E2_621 0.30 -1.8 707,995 + Pf6N2E2_621 0.42 -0.5 707,995 + Pf6N2E2_621 0.42 -1.8 707,996 - Pf6N2E2_621 0.42 -1.5 708,275 + Pf6N2E2_621 0.58 -0.4 708,567 + Pf6N2E2_621 0.75 -0.6 708,634 + Pf6N2E2_621 0.79 -0.9 708,634 + Pf6N2E2_621 0.79 -0.1 708,635 - Pf6N2E2_621 0.79 -1.1 708,861 + -0.5 708,862 - -0.7 708,862 - -2.1 708,950 - -0.7 708,950 - -1.7 708,958 + -3.6 708,959 - +0.7 709,165 + Pf6N2E2_622 0.16 -1.3 709,166 - Pf6N2E2_622 0.16 -0.9 709,245 + Pf6N2E2_622 0.23 -1.0 709,639 + Pf6N2E2_622 0.60 -1.6 709,639 + Pf6N2E2_622 0.60 -0.4 709,640 - Pf6N2E2_622 0.60 +0.1
Or see this region's nucleotide sequence