Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4388 and Pf6N2E2_4389 are separated by 235 nucleotides Pf6N2E2_4389 and Pf6N2E2_4390 are separated by 64 nucleotides Pf6N2E2_4390 and Pf6N2E2_4391 are separated by 155 nucleotides
Pf6N2E2_4388 - Gamma-glutamyl-putrescine oxidase (EC1.4.3.-), at 5,117,006 to 5,118,319
_4388
Pf6N2E2_4389 - FIG00954130: hypothetical protein, at 5,118,555 to 5,118,818
_4389
Pf6N2E2_4390 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 5,118,883 to 5,119,371
_4390
Pf6N2E2_4391 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 5,119,527 to 5,120,831
_4391
Position (kb)
5118
5119
5120 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 5117.919 kb on + strand, within Pf6N2E2_4388 at 5118.264 kb on + strand at 5118.265 kb on - strand at 5118.265 kb on - strand at 5118.265 kb on - strand at 5118.267 kb on + strand at 5118.268 kb on - strand at 5118.268 kb on - strand at 5118.268 kb on - strand at 5118.268 kb on - strand at 5118.268 kb on - strand at 5118.325 kb on + strand at 5118.326 kb on - strand at 5118.326 kb on - strand at 5118.326 kb on - strand at 5118.326 kb on - strand at 5118.363 kb on + strand at 5118.364 kb on - strand at 5118.364 kb on - strand at 5118.380 kb on - strand at 5118.424 kb on + strand at 5118.424 kb on + strand at 5118.425 kb on - strand at 5118.496 kb on + strand at 5118.497 kb on - strand at 5118.786 kb on + strand, within Pf6N2E2_4389 at 5118.786 kb on + strand, within Pf6N2E2_4389 at 5118.786 kb on + strand, within Pf6N2E2_4389 at 5118.786 kb on + strand, within Pf6N2E2_4389 at 5118.786 kb on + strand, within Pf6N2E2_4389 at 5118.786 kb on + strand, within Pf6N2E2_4389 at 5118.786 kb on + strand, within Pf6N2E2_4389 at 5118.786 kb on + strand, within Pf6N2E2_4389 at 5118.786 kb on + strand, within Pf6N2E2_4389 at 5118.786 kb on + strand, within Pf6N2E2_4389 at 5118.786 kb on + strand, within Pf6N2E2_4389 at 5118.786 kb on + strand, within Pf6N2E2_4389 at 5118.786 kb on + strand, within Pf6N2E2_4389 at 5118.786 kb on + strand, within Pf6N2E2_4389 at 5118.786 kb on + strand, within Pf6N2E2_4389 at 5118.787 kb on - strand, within Pf6N2E2_4389 at 5118.787 kb on - strand, within Pf6N2E2_4389 at 5118.787 kb on - strand, within Pf6N2E2_4389 at 5118.787 kb on - strand, within Pf6N2E2_4389 at 5118.787 kb on - strand, within Pf6N2E2_4389 at 5118.787 kb on - strand, within Pf6N2E2_4389 at 5118.787 kb on - strand, within Pf6N2E2_4389 at 5118.787 kb on - strand, within Pf6N2E2_4389 at 5118.787 kb on - strand, within Pf6N2E2_4389 at 5118.787 kb on - strand, within Pf6N2E2_4389 at 5118.787 kb on - strand, within Pf6N2E2_4389 at 5118.811 kb on + strand at 5118.811 kb on + strand at 5118.811 kb on + strand at 5118.812 kb on - strand at 5118.812 kb on - strand at 5118.812 kb on - strand at 5118.816 kb on + strand at 5118.816 kb on + strand at 5118.817 kb on - strand at 5118.817 kb on - strand at 5118.935 kb on + strand, within Pf6N2E2_4390 at 5118.935 kb on + strand, within Pf6N2E2_4390 at 5118.935 kb on + strand, within Pf6N2E2_4390 at 5118.935 kb on + strand, within Pf6N2E2_4390 at 5118.935 kb on + strand, within Pf6N2E2_4390 at 5118.935 kb on + strand, within Pf6N2E2_4390 at 5118.936 kb on - strand, within Pf6N2E2_4390 at 5118.936 kb on - strand, within Pf6N2E2_4390 at 5118.936 kb on - strand, within Pf6N2E2_4390 at 5118.936 kb on - strand, within Pf6N2E2_4390 at 5118.936 kb on - strand, within Pf6N2E2_4390 at 5118.995 kb on + strand, within Pf6N2E2_4390 at 5119.032 kb on - strand, within Pf6N2E2_4390 at 5119.032 kb on - strand, within Pf6N2E2_4390 at 5119.032 kb on - strand, within Pf6N2E2_4390 at 5119.032 kb on - strand, within Pf6N2E2_4390 at 5119.124 kb on + strand, within Pf6N2E2_4390 at 5119.125 kb on - strand, within Pf6N2E2_4390 at 5119.125 kb on - strand, within Pf6N2E2_4390 at 5119.193 kb on + strand, within Pf6N2E2_4390 at 5119.193 kb on + strand, within Pf6N2E2_4390 at 5119.193 kb on + strand, within Pf6N2E2_4390 at 5119.193 kb on + strand, within Pf6N2E2_4390 at 5119.193 kb on + strand, within Pf6N2E2_4390 at 5119.193 kb on + strand, within Pf6N2E2_4390 at 5119.193 kb on + strand, within Pf6N2E2_4390 at 5119.193 kb on + strand, within Pf6N2E2_4390 at 5119.309 kb on + strand, within Pf6N2E2_4390 at 5119.310 kb on - strand, within Pf6N2E2_4390 at 5119.310 kb on - strand, within Pf6N2E2_4390 at 5119.310 kb on - strand, within Pf6N2E2_4390 at 5119.310 kb on - strand, within Pf6N2E2_4390 at 5119.310 kb on - strand, within Pf6N2E2_4390 at 5119.321 kb on - strand, within Pf6N2E2_4390 at 5119.422 kb on - strand at 5119.431 kb on + strand at 5119.431 kb on + strand at 5119.433 kb on + strand at 5119.462 kb on + strand at 5119.462 kb on + strand at 5119.462 kb on + strand at 5119.462 kb on + strand at 5119.482 kb on + strand at 5119.482 kb on + strand at 5119.482 kb on + strand at 5119.483 kb on - strand at 5119.483 kb on - strand at 5119.483 kb on - strand at 5119.483 kb on - strand at 5119.486 kb on + strand at 5119.486 kb on + strand at 5119.486 kb on + strand at 5119.486 kb on + strand at 5119.487 kb on - strand at 5119.575 kb on + strand at 5119.575 kb on + strand at 5119.575 kb on + strand at 5119.575 kb on + strand at 5119.575 kb on + strand at 5119.576 kb on - strand at 5119.578 kb on + strand at 5119.578 kb on + strand at 5119.579 kb on - strand at 5119.579 kb on - strand at 5119.678 kb on - strand, within Pf6N2E2_4391 at 5119.782 kb on + strand, within Pf6N2E2_4391 at 5119.783 kb on - strand, within Pf6N2E2_4391 at 5119.867 kb on - strand, within Pf6N2E2_4391 at 5119.914 kb on + strand, within Pf6N2E2_4391 at 5119.914 kb on + strand, within Pf6N2E2_4391 at 5120.023 kb on + strand, within Pf6N2E2_4391 at 5120.135 kb on + strand, within Pf6N2E2_4391 at 5120.292 kb on + strand, within Pf6N2E2_4391 at 5120.352 kb on + strand, within Pf6N2E2_4391 at 5120.352 kb on + strand, within Pf6N2E2_4391
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 5,117,919 + Pf6N2E2_4388 0.69 -0.1 5,118,264 + -0.3 5,118,265 - -1.0 5,118,265 - +0.4 5,118,265 - +0.3 5,118,267 + +0.7 5,118,268 - +0.6 5,118,268 - +1.0 5,118,268 - +0.7 5,118,268 - +1.4 5,118,268 - +1.0 5,118,325 + -0.5 5,118,326 - +1.6 5,118,326 - -0.8 5,118,326 - +0.8 5,118,326 - +0.0 5,118,363 + -0.4 5,118,364 - +1.4 5,118,364 - +0.3 5,118,380 - -0.2 5,118,424 + -1.9 5,118,424 + -1.2 5,118,425 - +0.0 5,118,496 + +0.7 5,118,497 - +0.8 5,118,786 + Pf6N2E2_4389 0.88 -0.4 5,118,786 + Pf6N2E2_4389 0.88 -1.0 5,118,786 + Pf6N2E2_4389 0.88 -2.1 5,118,786 + Pf6N2E2_4389 0.88 -0.6 5,118,786 + Pf6N2E2_4389 0.88 -0.8 5,118,786 + Pf6N2E2_4389 0.88 -0.9 5,118,786 + Pf6N2E2_4389 0.88 +0.5 5,118,786 + Pf6N2E2_4389 0.88 -0.2 5,118,786 + Pf6N2E2_4389 0.88 -0.9 5,118,786 + Pf6N2E2_4389 0.88 +0.6 5,118,786 + Pf6N2E2_4389 0.88 -0.6 5,118,786 + Pf6N2E2_4389 0.88 +0.3 5,118,786 + Pf6N2E2_4389 0.88 -0.1 5,118,786 + Pf6N2E2_4389 0.88 -0.9 5,118,786 + Pf6N2E2_4389 0.88 -0.3 5,118,787 - Pf6N2E2_4389 0.88 -2.5 5,118,787 - Pf6N2E2_4389 0.88 +1.3 5,118,787 - Pf6N2E2_4389 0.88 -0.9 5,118,787 - Pf6N2E2_4389 0.88 -1.0 5,118,787 - Pf6N2E2_4389 0.88 -1.2 5,118,787 - Pf6N2E2_4389 0.88 -0.3 5,118,787 - Pf6N2E2_4389 0.88 +0.0 5,118,787 - Pf6N2E2_4389 0.88 -0.0 5,118,787 - Pf6N2E2_4389 0.88 -0.8 5,118,787 - Pf6N2E2_4389 0.88 -1.6 5,118,787 - Pf6N2E2_4389 0.88 +0.4 5,118,811 + -0.4 5,118,811 + -0.4 5,118,811 + -0.4 5,118,812 - +0.4 5,118,812 - +1.3 5,118,812 - -0.1 5,118,816 + -0.9 5,118,816 + +0.0 5,118,817 - -0.7 5,118,817 - -1.4 5,118,935 + Pf6N2E2_4390 0.11 -3.1 5,118,935 + Pf6N2E2_4390 0.11 -2.4 5,118,935 + Pf6N2E2_4390 0.11 -3.8 5,118,935 + Pf6N2E2_4390 0.11 -3.7 5,118,935 + Pf6N2E2_4390 0.11 -1.7 5,118,935 + Pf6N2E2_4390 0.11 -2.8 5,118,936 - Pf6N2E2_4390 0.11 -1.7 5,118,936 - Pf6N2E2_4390 0.11 -4.0 5,118,936 - Pf6N2E2_4390 0.11 -0.1 5,118,936 - Pf6N2E2_4390 0.11 -3.9 5,118,936 - Pf6N2E2_4390 0.11 -4.4 5,118,995 + Pf6N2E2_4390 0.23 -3.7 5,119,032 - Pf6N2E2_4390 0.30 -4.1 5,119,032 - Pf6N2E2_4390 0.30 -3.6 5,119,032 - Pf6N2E2_4390 0.30 -3.2 5,119,032 - Pf6N2E2_4390 0.30 -4.0 5,119,124 + Pf6N2E2_4390 0.49 -0.6 5,119,125 - Pf6N2E2_4390 0.49 -3.2 5,119,125 - Pf6N2E2_4390 0.49 -3.0 5,119,193 + Pf6N2E2_4390 0.63 -2.8 5,119,193 + Pf6N2E2_4390 0.63 +0.5 5,119,193 + Pf6N2E2_4390 0.63 -1.3 5,119,193 + Pf6N2E2_4390 0.63 -2.6 5,119,193 + Pf6N2E2_4390 0.63 -1.5 5,119,193 + Pf6N2E2_4390 0.63 -1.7 5,119,193 + Pf6N2E2_4390 0.63 -2.9 5,119,193 + Pf6N2E2_4390 0.63 -3.3 5,119,309 + Pf6N2E2_4390 0.87 -1.4 5,119,310 - Pf6N2E2_4390 0.87 -3.5 5,119,310 - Pf6N2E2_4390 0.87 -4.4 5,119,310 - Pf6N2E2_4390 0.87 -3.5 5,119,310 - Pf6N2E2_4390 0.87 -4.3 5,119,310 - Pf6N2E2_4390 0.87 -0.3 5,119,321 - Pf6N2E2_4390 0.90 -4.1 5,119,422 - -3.8 5,119,431 + -1.3 5,119,431 + -1.6 5,119,433 + -1.4 5,119,462 + +0.6 5,119,462 + -2.3 5,119,462 + -1.3 5,119,462 + -1.9 5,119,482 + -0.9 5,119,482 + +0.0 5,119,482 + -1.0 5,119,483 - -0.6 5,119,483 - -3.2 5,119,483 - -2.2 5,119,483 - -2.6 5,119,486 + +0.0 5,119,486 + -2.7 5,119,486 + +0.8 5,119,486 + -1.9 5,119,487 - -2.0 5,119,575 + -2.4 5,119,575 + -2.7 5,119,575 + -1.6 5,119,575 + -3.2 5,119,575 + -2.7 5,119,576 - -0.9 5,119,578 + +1.1 5,119,578 + -1.9 5,119,579 - +0.1 5,119,579 - -3.2 5,119,678 - Pf6N2E2_4391 0.12 -2.3 5,119,782 + Pf6N2E2_4391 0.20 -3.3 5,119,783 - Pf6N2E2_4391 0.20 -2.7 5,119,867 - Pf6N2E2_4391 0.26 -1.4 5,119,914 + Pf6N2E2_4391 0.30 -1.9 5,119,914 + Pf6N2E2_4391 0.30 -0.9 5,120,023 + Pf6N2E2_4391 0.38 -3.0 5,120,135 + Pf6N2E2_4391 0.47 -3.0 5,120,292 + Pf6N2E2_4391 0.59 -3.1 5,120,352 + Pf6N2E2_4391 0.63 -2.4 5,120,352 + Pf6N2E2_4391 0.63 -4.3
Or see this region's nucleotide sequence