Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4390

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4388 and Pf6N2E2_4389 are separated by 235 nucleotidesPf6N2E2_4389 and Pf6N2E2_4390 are separated by 64 nucleotidesPf6N2E2_4390 and Pf6N2E2_4391 are separated by 155 nucleotides Pf6N2E2_4388 - Gamma-glutamyl-putrescine oxidase (EC1.4.3.-), at 5,117,006 to 5,118,319 _4388 Pf6N2E2_4389 - FIG00954130: hypothetical protein, at 5,118,555 to 5,118,818 _4389 Pf6N2E2_4390 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 5,118,883 to 5,119,371 _4390 Pf6N2E2_4391 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 5,119,527 to 5,120,831 _4391 Position (kb) 5118 5119 5120Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5117.919 kb on + strand, within Pf6N2E2_4388at 5118.264 kb on + strandat 5118.265 kb on - strandat 5118.265 kb on - strandat 5118.265 kb on - strandat 5118.267 kb on + strandat 5118.268 kb on - strandat 5118.268 kb on - strandat 5118.268 kb on - strandat 5118.268 kb on - strandat 5118.268 kb on - strandat 5118.325 kb on + strandat 5118.326 kb on - strandat 5118.326 kb on - strandat 5118.326 kb on - strandat 5118.326 kb on - strandat 5118.363 kb on + strandat 5118.364 kb on - strandat 5118.364 kb on - strandat 5118.380 kb on - strandat 5118.424 kb on + strandat 5118.424 kb on + strandat 5118.425 kb on - strandat 5118.496 kb on + strandat 5118.497 kb on - strandat 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.786 kb on + strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.787 kb on - strand, within Pf6N2E2_4389at 5118.811 kb on + strandat 5118.811 kb on + strandat 5118.811 kb on + strandat 5118.812 kb on - strandat 5118.812 kb on - strandat 5118.812 kb on - strandat 5118.816 kb on + strandat 5118.816 kb on + strandat 5118.817 kb on - strandat 5118.817 kb on - strandat 5118.935 kb on + strand, within Pf6N2E2_4390at 5118.935 kb on + strand, within Pf6N2E2_4390at 5118.935 kb on + strand, within Pf6N2E2_4390at 5118.935 kb on + strand, within Pf6N2E2_4390at 5118.935 kb on + strand, within Pf6N2E2_4390at 5118.935 kb on + strand, within Pf6N2E2_4390at 5118.936 kb on - strand, within Pf6N2E2_4390at 5118.936 kb on - strand, within Pf6N2E2_4390at 5118.936 kb on - strand, within Pf6N2E2_4390at 5118.936 kb on - strand, within Pf6N2E2_4390at 5118.936 kb on - strand, within Pf6N2E2_4390at 5118.995 kb on + strand, within Pf6N2E2_4390at 5119.032 kb on - strand, within Pf6N2E2_4390at 5119.032 kb on - strand, within Pf6N2E2_4390at 5119.032 kb on - strand, within Pf6N2E2_4390at 5119.032 kb on - strand, within Pf6N2E2_4390at 5119.124 kb on + strand, within Pf6N2E2_4390at 5119.125 kb on - strand, within Pf6N2E2_4390at 5119.125 kb on - strand, within Pf6N2E2_4390at 5119.193 kb on + strand, within Pf6N2E2_4390at 5119.193 kb on + strand, within Pf6N2E2_4390at 5119.193 kb on + strand, within Pf6N2E2_4390at 5119.193 kb on + strand, within Pf6N2E2_4390at 5119.193 kb on + strand, within Pf6N2E2_4390at 5119.193 kb on + strand, within Pf6N2E2_4390at 5119.193 kb on + strand, within Pf6N2E2_4390at 5119.193 kb on + strand, within Pf6N2E2_4390at 5119.309 kb on + strand, within Pf6N2E2_4390at 5119.310 kb on - strand, within Pf6N2E2_4390at 5119.310 kb on - strand, within Pf6N2E2_4390at 5119.310 kb on - strand, within Pf6N2E2_4390at 5119.310 kb on - strand, within Pf6N2E2_4390at 5119.310 kb on - strand, within Pf6N2E2_4390at 5119.321 kb on - strand, within Pf6N2E2_4390at 5119.422 kb on - strandat 5119.431 kb on + strandat 5119.431 kb on + strandat 5119.433 kb on + strandat 5119.462 kb on + strandat 5119.462 kb on + strandat 5119.462 kb on + strandat 5119.462 kb on + strandat 5119.482 kb on + strandat 5119.482 kb on + strandat 5119.482 kb on + strandat 5119.483 kb on - strandat 5119.483 kb on - strandat 5119.483 kb on - strandat 5119.483 kb on - strandat 5119.486 kb on + strandat 5119.486 kb on + strandat 5119.486 kb on + strandat 5119.486 kb on + strandat 5119.487 kb on - strandat 5119.575 kb on + strandat 5119.575 kb on + strandat 5119.575 kb on + strandat 5119.575 kb on + strandat 5119.575 kb on + strandat 5119.576 kb on - strandat 5119.578 kb on + strandat 5119.578 kb on + strandat 5119.579 kb on - strandat 5119.579 kb on - strandat 5119.678 kb on - strand, within Pf6N2E2_4391at 5119.782 kb on + strand, within Pf6N2E2_4391at 5119.783 kb on - strand, within Pf6N2E2_4391at 5119.867 kb on - strand, within Pf6N2E2_4391at 5119.914 kb on + strand, within Pf6N2E2_4391at 5119.914 kb on + strand, within Pf6N2E2_4391at 5120.023 kb on + strand, within Pf6N2E2_4391at 5120.135 kb on + strand, within Pf6N2E2_4391at 5120.292 kb on + strand, within Pf6N2E2_4391at 5120.352 kb on + strand, within Pf6N2E2_4391at 5120.352 kb on + strand, within Pf6N2E2_4391

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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5,117,919 + Pf6N2E2_4388 0.69 -0.1
5,118,264 + -0.3
5,118,265 - -1.0
5,118,265 - +0.4
5,118,265 - +0.3
5,118,267 + +0.7
5,118,268 - +0.6
5,118,268 - +1.0
5,118,268 - +0.7
5,118,268 - +1.4
5,118,268 - +1.0
5,118,325 + -0.5
5,118,326 - +1.6
5,118,326 - -0.8
5,118,326 - +0.8
5,118,326 - +0.0
5,118,363 + -0.4
5,118,364 - +1.4
5,118,364 - +0.3
5,118,380 - -0.2
5,118,424 + -1.9
5,118,424 + -1.2
5,118,425 - +0.0
5,118,496 + +0.7
5,118,497 - +0.8
5,118,786 + Pf6N2E2_4389 0.88 -0.4
5,118,786 + Pf6N2E2_4389 0.88 -1.0
5,118,786 + Pf6N2E2_4389 0.88 -2.1
5,118,786 + Pf6N2E2_4389 0.88 -0.6
5,118,786 + Pf6N2E2_4389 0.88 -0.8
5,118,786 + Pf6N2E2_4389 0.88 -0.9
5,118,786 + Pf6N2E2_4389 0.88 +0.5
5,118,786 + Pf6N2E2_4389 0.88 -0.2
5,118,786 + Pf6N2E2_4389 0.88 -0.9
5,118,786 + Pf6N2E2_4389 0.88 +0.6
5,118,786 + Pf6N2E2_4389 0.88 -0.6
5,118,786 + Pf6N2E2_4389 0.88 +0.3
5,118,786 + Pf6N2E2_4389 0.88 -0.1
5,118,786 + Pf6N2E2_4389 0.88 -0.9
5,118,786 + Pf6N2E2_4389 0.88 -0.3
5,118,787 - Pf6N2E2_4389 0.88 -2.5
5,118,787 - Pf6N2E2_4389 0.88 +1.3
5,118,787 - Pf6N2E2_4389 0.88 -0.9
5,118,787 - Pf6N2E2_4389 0.88 -1.0
5,118,787 - Pf6N2E2_4389 0.88 -1.2
5,118,787 - Pf6N2E2_4389 0.88 -0.3
5,118,787 - Pf6N2E2_4389 0.88 +0.0
5,118,787 - Pf6N2E2_4389 0.88 -0.0
5,118,787 - Pf6N2E2_4389 0.88 -0.8
5,118,787 - Pf6N2E2_4389 0.88 -1.6
5,118,787 - Pf6N2E2_4389 0.88 +0.4
5,118,811 + -0.4
5,118,811 + -0.4
5,118,811 + -0.4
5,118,812 - +0.4
5,118,812 - +1.3
5,118,812 - -0.1
5,118,816 + -0.9
5,118,816 + +0.0
5,118,817 - -0.7
5,118,817 - -1.4
5,118,935 + Pf6N2E2_4390 0.11 -3.1
5,118,935 + Pf6N2E2_4390 0.11 -2.4
5,118,935 + Pf6N2E2_4390 0.11 -3.8
5,118,935 + Pf6N2E2_4390 0.11 -3.7
5,118,935 + Pf6N2E2_4390 0.11 -1.7
5,118,935 + Pf6N2E2_4390 0.11 -2.8
5,118,936 - Pf6N2E2_4390 0.11 -1.7
5,118,936 - Pf6N2E2_4390 0.11 -4.0
5,118,936 - Pf6N2E2_4390 0.11 -0.1
5,118,936 - Pf6N2E2_4390 0.11 -3.9
5,118,936 - Pf6N2E2_4390 0.11 -4.4
5,118,995 + Pf6N2E2_4390 0.23 -3.7
5,119,032 - Pf6N2E2_4390 0.30 -4.1
5,119,032 - Pf6N2E2_4390 0.30 -3.6
5,119,032 - Pf6N2E2_4390 0.30 -3.2
5,119,032 - Pf6N2E2_4390 0.30 -4.0
5,119,124 + Pf6N2E2_4390 0.49 -0.6
5,119,125 - Pf6N2E2_4390 0.49 -3.2
5,119,125 - Pf6N2E2_4390 0.49 -3.0
5,119,193 + Pf6N2E2_4390 0.63 -2.8
5,119,193 + Pf6N2E2_4390 0.63 +0.5
5,119,193 + Pf6N2E2_4390 0.63 -1.3
5,119,193 + Pf6N2E2_4390 0.63 -2.6
5,119,193 + Pf6N2E2_4390 0.63 -1.5
5,119,193 + Pf6N2E2_4390 0.63 -1.7
5,119,193 + Pf6N2E2_4390 0.63 -2.9
5,119,193 + Pf6N2E2_4390 0.63 -3.3
5,119,309 + Pf6N2E2_4390 0.87 -1.4
5,119,310 - Pf6N2E2_4390 0.87 -3.5
5,119,310 - Pf6N2E2_4390 0.87 -4.4
5,119,310 - Pf6N2E2_4390 0.87 -3.5
5,119,310 - Pf6N2E2_4390 0.87 -4.3
5,119,310 - Pf6N2E2_4390 0.87 -0.3
5,119,321 - Pf6N2E2_4390 0.90 -4.1
5,119,422 - -3.8
5,119,431 + -1.3
5,119,431 + -1.6
5,119,433 + -1.4
5,119,462 + +0.6
5,119,462 + -2.3
5,119,462 + -1.3
5,119,462 + -1.9
5,119,482 + -0.9
5,119,482 + +0.0
5,119,482 + -1.0
5,119,483 - -0.6
5,119,483 - -3.2
5,119,483 - -2.2
5,119,483 - -2.6
5,119,486 + +0.0
5,119,486 + -2.7
5,119,486 + +0.8
5,119,486 + -1.9
5,119,487 - -2.0
5,119,575 + -2.4
5,119,575 + -2.7
5,119,575 + -1.6
5,119,575 + -3.2
5,119,575 + -2.7
5,119,576 - -0.9
5,119,578 + +1.1
5,119,578 + -1.9
5,119,579 - +0.1
5,119,579 - -3.2
5,119,678 - Pf6N2E2_4391 0.12 -2.3
5,119,782 + Pf6N2E2_4391 0.20 -3.3
5,119,783 - Pf6N2E2_4391 0.20 -2.7
5,119,867 - Pf6N2E2_4391 0.26 -1.4
5,119,914 + Pf6N2E2_4391 0.30 -1.9
5,119,914 + Pf6N2E2_4391 0.30 -0.9
5,120,023 + Pf6N2E2_4391 0.38 -3.0
5,120,135 + Pf6N2E2_4391 0.47 -3.0
5,120,292 + Pf6N2E2_4391 0.59 -3.1
5,120,352 + Pf6N2E2_4391 0.63 -2.4
5,120,352 + Pf6N2E2_4391 0.63 -4.3

Or see this region's nucleotide sequence