Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18660

Experiment: CDM1 without Isoleucine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Isoleucine
1,972,314	-		BBR_RS18655	0.42	+0.5
1,972,323	+		BBR_RS18655	0.43	-0.1
1,972,323	+		BBR_RS18655	0.43	-0.7
1,972,323	+		BBR_RS18655	0.43	+0.2
1,972,336	+		BBR_RS18655	0.44	+0.5
1,972,344	-		BBR_RS18655	0.45	+0.4
1,972,356	-		BBR_RS18655	0.46	+0.9
1,972,357	-		BBR_RS18655	0.46	-1.1
1,972,378	-		BBR_RS18655	0.48	+0.8
1,972,383	+		BBR_RS18655	0.48	+0.6
1,972,386	-		BBR_RS18655	0.49	+0.1
1,972,391	-		BBR_RS18655	0.49	-0.0
1,972,426	-		BBR_RS18655	0.52	+0.4
1,972,429	+		BBR_RS18655	0.53	-0.5
1,972,445	+		BBR_RS18655	0.54	-2.1
1,972,473	-		BBR_RS18655	0.57	-0.3
1,972,484	+		BBR_RS18655	0.58	-0.5
1,972,485	-		BBR_RS18655	0.58	+0.2
1,972,493	-		BBR_RS18655	0.59	+0.0
1,972,502	+		BBR_RS18655	0.59	-1.1
1,972,571	-		BBR_RS18655	0.66	+0.7
1,972,590	-		BBR_RS18655	0.68	-0.1
1,972,599	+		BBR_RS18655	0.68	+0.5
1,972,646	-		BBR_RS18655	0.73	-0.5
1,972,646	-		BBR_RS18655	0.73	+0.2
1,972,650	-		BBR_RS18655	0.73	-0.0
1,972,694	+		BBR_RS18655	0.77	-2.2
1,972,731	-		BBR_RS18655	0.81	-0.4
1,972,731	-		BBR_RS18655	0.81	+0.1
1,972,736	-		BBR_RS18655	0.81	+0.8
1,972,764	-		BBR_RS18655	0.84	+0.5
1,972,784	-		BBR_RS18655	0.86	-0.3
1,972,803	-		BBR_RS18655	0.87	-1.3
1,972,803	-		BBR_RS18655	0.87	-0.4
1,972,812	-		BBR_RS18655	0.88	+1.2
1,972,844	-				-0.7
1,972,862	-				-0.1
1,972,874	-				-1.9
1,972,874	-				-0.3
1,972,883	-				+0.2
1,972,903	-				+0.1
1,972,907	+				+0.4
1,972,909	+				-0.4
1,972,915	-				+0.6
1,972,915	-				+0.2
1,972,915	-				-0.6
1,972,925	-				-0.8
1,972,940	-				+0.0
1,973,031	+				-0.8
1,973,031	+				+0.8
1,973,039	-				-0.3
1,973,041	+				+0.1
1,973,041	+				-0.2
1,973,043	+				-0.3
1,973,043	+				+0.1
1,973,043	+				-0.3
1,973,043	+				-0.5
1,973,049	-				-0.3
1,973,049	-				-0.9
1,973,051	+				+1.6
1,973,051	-				-0.5
1,973,064	+				-0.2
1,973,090	+				-0.3
1,973,100	-				-2.3
1,973,100	-				-1.9
1,973,166	-				-1.1
1,973,202	+				+0.9
1,973,210	-				+0.1
1,973,247	+				-0.2
1,973,340	+				+0.3
1,973,341	+				-0.0
1,973,343	-				+0.6
1,973,343	-				+1.3
1,973,355	+				+0.2
1,973,357	-				-0.7
1,973,368	+				+1.6
1,973,373	+				-0.5
1,973,378	+				+0.8
1,973,378	+				+1.0
1,973,378	+				+0.8
1,973,407	+				+0.7
1,973,407	+				+0.5
1,973,419	+				-0.1
1,973,424	+				+1.6
1,973,424	+				-2.0
1,973,424	+				-0.1
1,973,424	+				+0.8
1,973,424	+				+0.7
1,973,424	+				-0.4
1,973,430	-				+0.4
1,973,432	-				-0.1
1,973,432	-				-2.3
1,973,432	-				+0.1
1,973,432	-				+0.3
1,973,432	-				+0.4
1,973,432	-				+1.0
1,973,432	-				+0.2
1,973,432	-				+0.2
1,973,432	-				+0.6
1,973,432	-				+0.0
1,973,432	-				+0.9
1,973,432	-				+0.4
1,973,433	-				+0.6
1,973,435	+				-0.4
1,973,435	+				-0.4
1,973,437	+				+1.1
1,973,443	-				+0.3
1,973,443	-				-1.8
1,973,460	-				-0.4
1,973,498	+				-0.2
1,973,509	+				-0.0
1,973,509	+				+0.1
1,973,509	+				-0.0
1,973,517	-				+0.8
1,973,517	-				+0.4
1,973,517	-				+0.8
1,973,517	-				+0.3
1,973,517	-				+0.7
1,973,517	-				-0.8
1,973,517	-				+0.8
1,973,517	-				+0.8
1,973,517	-				+0.1
1,973,522	-				+0.6
1,973,559	-		BBR_RS18660	0.11	+0.1
1,973,576	-		BBR_RS18660	0.12	-0.2
1,973,576	-		BBR_RS18660	0.12	-0.1
1,973,576	-		BBR_RS18660	0.12	+0.1
1,973,583	+		BBR_RS18660	0.12	+1.1
1,973,597	-		BBR_RS18660	0.13	+0.1
1,973,612	+		BBR_RS18660	0.13	+0.8
1,973,653	-		BBR_RS18660	0.15	+0.5
1,973,720	-		BBR_RS18660	0.18	+0.5
1,973,730	+		BBR_RS18660	0.19	+0.5
1,973,760	+		BBR_RS18660	0.20	+0.4
1,973,768	-		BBR_RS18660	0.20	+1.1
1,973,768	-		BBR_RS18660	0.20	+0.2
1,973,784	+		BBR_RS18660	0.21	+0.4
1,973,790	+		BBR_RS18660	0.21	+0.9
1,973,795	+		BBR_RS18660	0.21	+0.8
1,973,843	-		BBR_RS18660	0.24	+0.6
1,973,852	+		BBR_RS18660	0.24	-1.8
1,973,852	+		BBR_RS18660	0.24	-0.1
1,973,852	+		BBR_RS18660	0.24	+0.8
1,973,854	+		BBR_RS18660	0.24	-0.1
1,973,854	+		BBR_RS18660	0.24	+1.2
1,973,907	+		BBR_RS18660	0.26	+0.4
1,973,972	+		BBR_RS18660	0.29	-2.4
1,973,980	-		BBR_RS18660	0.30	+0.2
1,973,980	-		BBR_RS18660	0.30	+0.3
1,973,986	+		BBR_RS18660	0.30	+0.5
1,973,986	+		BBR_RS18660	0.30	+0.3
1,974,005	-		BBR_RS18660	0.31	+0.7
1,974,015	-		BBR_RS18660	0.31	+1.0
1,974,024	+		BBR_RS18660	0.32	+0.4
1,974,057	-		BBR_RS18660	0.33	+0.1
1,974,057	-		BBR_RS18660	0.33	+0.5
1,974,092	-		BBR_RS18660	0.35	+0.0
1,974,214	-		BBR_RS18660	0.40	+0.8
1,974,214	-		BBR_RS18660	0.40	+0.0
1,974,234	+		BBR_RS18660	0.41	-0.4
1,974,234	-		BBR_RS18660	0.41	-2.3
1,974,241	-		BBR_RS18660	0.41	+0.7
1,974,317	+		BBR_RS18660	0.45	+0.2
1,974,317	+		BBR_RS18660	0.45	-0.8
1,974,325	+		BBR_RS18660	0.45	+0.8
1,974,352	+		BBR_RS18660	0.46	+1.5
1,974,384	+		BBR_RS18660	0.48	+0.1
1,974,394	-		BBR_RS18660	0.48	-0.7
1,974,461	+		BBR_RS18660	0.51	-0.8
1,974,461	+		BBR_RS18660	0.51	-0.3
1,974,469	-		BBR_RS18660	0.51	+1.7
1,974,469	-		BBR_RS18660	0.51	-0.5
1,974,497	+		BBR_RS18660	0.53	+0.5
1,974,501	-		BBR_RS18660	0.53	+0.8
1,974,517	+		BBR_RS18660	0.53	-0.1
1,974,564	+		BBR_RS18660	0.56	+0.0
1,974,603	+		BBR_RS18660	0.57	+1.5
1,974,657	-		BBR_RS18660	0.60	+0.5
1,974,702	+		BBR_RS18660	0.62	-2.1
1,974,735	-		BBR_RS18660	0.63	-0.2
1,974,740	-		BBR_RS18660	0.63	+1.1
1,974,763	-		BBR_RS18660	0.64	-0.1
1,974,765	+		BBR_RS18660	0.64	-0.2
1,974,765	+		BBR_RS18660	0.64	-0.1
1,974,765	+		BBR_RS18660	0.64	-0.8
1,974,765	+		BBR_RS18660	0.64	+0.3
1,974,765	+		BBR_RS18660	0.64	+0.5
1,974,765	+		BBR_RS18660	0.64	-0.2
1,974,765	+		BBR_RS18660	0.64	-0.5
1,974,768	-		BBR_RS18660	0.65	-0.2
1,974,773	-		BBR_RS18660	0.65	+0.2
1,974,773	-		BBR_RS18660	0.65	-1.7
1,974,773	-		BBR_RS18660	0.65	+1.0
1,974,789	+		BBR_RS18660	0.66	+0.5
1,974,789	-		BBR_RS18660	0.66	+0.7
1,974,790	-		BBR_RS18660	0.66	-0.7
1,974,791	+		BBR_RS18660	0.66	-0.1
1,974,797	-		BBR_RS18660	0.66	+0.4
1,974,797	-		BBR_RS18660	0.66	+0.1
1,974,797	-		BBR_RS18660	0.66	+0.7
1,974,811	+		BBR_RS18660	0.66	+0.4
1,974,830	+		BBR_RS18660	0.67	+0.7
1,974,830	+		BBR_RS18660	0.67	+0.7
1,974,851	+		BBR_RS18660	0.68	+0.6
1,974,853	+		BBR_RS18660	0.68	+0.2
1,974,853	-		BBR_RS18660	0.68	-0.1
1,974,853	-		BBR_RS18660	0.68	-0.9
1,974,853	-		BBR_RS18660	0.68	+0.2
1,974,853	-		BBR_RS18660	0.68	+0.6
1,974,876	-		BBR_RS18660	0.69	+0.7
1,974,946	+		BBR_RS18660	0.72	-3.1
1,974,950	-		BBR_RS18660	0.73	+0.3
1,974,954	-		BBR_RS18660	0.73	-0.4
1,974,965	+		BBR_RS18660	0.73	-1.8
1,974,966	-		BBR_RS18660	0.73	-0.0
1,975,056	+		BBR_RS18660	0.77	+0.2
1,975,069	+		BBR_RS18660	0.78	+0.5
1,975,070	-		BBR_RS18660	0.78	+0.1
1,975,110	+		BBR_RS18660	0.80	-0.2
1,975,110	+		BBR_RS18660	0.80	+1.2
1,975,110	+		BBR_RS18660	0.80	-0.8
1,975,110	+		BBR_RS18660	0.80	+0.2
1,975,122	+		BBR_RS18660	0.80	+1.3
1,975,125	-		BBR_RS18660	0.80	+0.7
1,975,155	-		BBR_RS18660	0.82	-0.6
1,975,157	+		BBR_RS18660	0.82	+0.6
1,975,161	+		BBR_RS18660	0.82	-0.8
1,975,169	-		BBR_RS18660	0.82	+1.1
1,975,169	-		BBR_RS18660	0.82	+0.7
1,975,169	-		BBR_RS18660	0.82	+0.7
1,975,180	-		BBR_RS18660	0.83	+0.1
1,975,195	-		BBR_RS18660	0.84	-0.8
1,975,218	+		BBR_RS18660	0.85	+0.2
1,975,218	+		BBR_RS18660	0.85	-0.1
1,975,218	+		BBR_RS18660	0.85	+0.5
1,975,218	+		BBR_RS18660	0.85	+0.2
1,975,218	+		BBR_RS18660	0.85	+0.0
1,975,226	-		BBR_RS18660	0.85	+0.4
1,975,226	-		BBR_RS18660	0.85	+2.0
1,975,229	+		BBR_RS18660	0.85	-1.5
1,975,237	-		BBR_RS18660	0.85	+1.1
1,975,237	-		BBR_RS18660	0.85	+0.7
1,975,237	-		BBR_RS18660	0.85	+0.4
1,975,237	-		BBR_RS18660	0.85	+1.5
1,975,237	-		BBR_RS18660	0.85	+0.6
1,975,239	+		BBR_RS18660	0.85	-0.0
1,975,239	+		BBR_RS18660	0.85	-0.2
1,975,239	+		BBR_RS18660	0.85	+1.4
1,975,242	-		BBR_RS18660	0.86	+0.2
1,975,261	+		BBR_RS18660	0.86	-0.8
1,975,263	-		BBR_RS18660	0.87	+0.1
1,975,296	-		BBR_RS18660	0.88	+0.5
1,975,301	+		BBR_RS18660	0.88	-2.7
1,975,309	+		BBR_RS18660	0.89	+0.4
1,975,327	-		BBR_RS18660	0.89	+1.4
1,975,327	-		BBR_RS18660	0.89	+0.3
1,975,357	-				-0.4
1,975,357	-				+0.2
1,975,371	-				-0.3
1,975,414	+				-1.8
1,975,414	+				-0.0
1,975,414	+				+0.5
1,975,414	+				-1.0
1,975,422	-				-0.4
1,975,424	-				+0.3
1,975,424	-				+0.9
1,975,425	-				+0.3
1,975,431	-				+0.9
1,975,437	+				-0.5
1,975,438	+				+0.9
1,975,507	+				+1.2
1,975,514	-				-0.1
1,975,553	+				-1.3
1,975,554	-				-2.1
1,975,558	+				-0.4
1,975,558	+				+0.0
1,975,571	-				-0.1
1,975,576	+				+0.5
1,975,579	-				+0.0
1,975,581	-				+0.8
1,975,581	-				-0.1
1,975,581	-				-2.4
1,975,581	-				+0.3
1,975,584	-				+1.4
1,975,653	+				-0.2
1,975,653	+				+0.0
1,975,661	-				+0.6
1,975,661	-				+0.5
1,975,669	+				+0.3
1,975,670	+				-1.1
1,975,671	+				-1.0
1,975,712	+				-0.2
1,975,714	-				+0.7
1,975,763	-				-0.4
1,975,770	+				+0.6
1,975,791	-				-0.4
1,975,791	-				+0.3
1,975,816	+				-2.5
1,975,841	-				+0.1
1,975,844	-				+1.3
1,975,853	+				-3.6
1,975,878	-		BBR_RS18665	0.10	-2.8
1,975,886	-		BBR_RS18665	0.11	-2.0
1,975,895	+		BBR_RS18665	0.12	-0.4
1,975,914	+		BBR_RS18665	0.14	+0.2
1,975,918	+		BBR_RS18665	0.15	-0.2
1,975,918	+		BBR_RS18665	0.15	-0.1
1,975,918	+		BBR_RS18665	0.15	-2.1
1,975,921	-		BBR_RS18665	0.15	-0.2
1,975,928	+		BBR_RS18665	0.16	-0.5
1,975,928	+		BBR_RS18665	0.16	+1.0
1,975,928	+		BBR_RS18665	0.16	-0.7
1,975,928	+		BBR_RS18665	0.16	-0.0
1,975,936	-		BBR_RS18665	0.17	+0.3
1,975,936	-		BBR_RS18665	0.17	-0.4
1,975,936	-		BBR_RS18665	0.17	-0.8
1,975,938	-		BBR_RS18665	0.17	-0.5
1,975,951	-		BBR_RS18665	0.18	+0.2
1,975,951	-		BBR_RS18665	0.18	-0.2
1,976,051	+		BBR_RS18665	0.29	-1.1
1,976,058	+		BBR_RS18665	0.29	-2.3
1,976,059	-		BBR_RS18665	0.29	-1.3
1,976,059	-		BBR_RS18665	0.29	-0.3
1,976,066	+		BBR_RS18665	0.30	-1.2
1,976,067	+		BBR_RS18665	0.30	-2.5
1,976,075	-		BBR_RS18665	0.31	-0.7
1,976,100	-		BBR_RS18665	0.34	-2.0
1,976,101	+		BBR_RS18665	0.34	-1.1
1,976,102	+		BBR_RS18665	0.34	-0.7
1,976,104	-		BBR_RS18665	0.34	-0.1
1,976,112	+		BBR_RS18665	0.35	-0.8
1,976,128	-		BBR_RS18665	0.37	-0.5
1,976,128	-		BBR_RS18665	0.37	+0.0
1,976,145	+		BBR_RS18665	0.38	-0.5
1,976,173	-		BBR_RS18665	0.41	+0.4
1,976,175	+		BBR_RS18665	0.42	-4.4
1,976,181	-		BBR_RS18665	0.42	+0.1
1,976,193	-		BBR_RS18665	0.44	-2.6
1,976,200	+		BBR_RS18665	0.44	-2.5
1,976,208	-		BBR_RS18665	0.45	-0.5
1,976,208	-		BBR_RS18665	0.45	+0.4
1,976,210	+		BBR_RS18665	0.45	-0.7
1,976,210	+		BBR_RS18665	0.45	-0.8
1,976,210	+		BBR_RS18665	0.45	-1.9
1,976,218	-		BBR_RS18665	0.46	-1.1
1,976,218	-		BBR_RS18665	0.46	-0.1
1,976,218	-		BBR_RS18665	0.46	+1.0
1,976,218	-		BBR_RS18665	0.46	-0.9
1,976,244	+		BBR_RS18665	0.49	+0.2
1,976,252	-		BBR_RS18665	0.50	-1.1
1,976,252	-		BBR_RS18665	0.50	+0.7
1,976,252	-		BBR_RS18665	0.50	-0.5
1,976,274	+		BBR_RS18665	0.52	-2.7
1,976,274	+		BBR_RS18665	0.52	-1.7
1,976,328	+		BBR_RS18665	0.58	-2.3
1,976,328	+		BBR_RS18665	0.58	-3.0
1,976,329	-		BBR_RS18665	0.58	+0.5
1,976,374	-		BBR_RS18665	0.63	+0.6
1,976,392	-		BBR_RS18665	0.64	+0.1
1,976,394	+		BBR_RS18665	0.65	-0.4
1,976,402	-		BBR_RS18665	0.66	-0.6
1,976,402	-		BBR_RS18665	0.66	-0.7
1,976,433	-		BBR_RS18665	0.69	+0.3
1,976,433	-		BBR_RS18665	0.69	+0.4
1,976,438	+		BBR_RS18665	0.69	-1.1
1,976,438	+		BBR_RS18665	0.69	+0.2
1,976,446	-		BBR_RS18665	0.70	+1.2
1,976,446	-		BBR_RS18665	0.70	-1.0
1,976,446	-		BBR_RS18665	0.70	+1.1
1,976,460	+		BBR_RS18665	0.72	-0.7
1,976,461	+		BBR_RS18665	0.72	+0.7
1,976,461	+		BBR_RS18665	0.72	-3.3
1,976,469	-		BBR_RS18665	0.73	+0.6
1,976,469	-		BBR_RS18665	0.73	+0.6
1,976,469	-		BBR_RS18665	0.73	-0.4
1,976,482	-		BBR_RS18665	0.74	+1.1
1,976,486	+		BBR_RS18665	0.74	-2.1
1,976,494	-		BBR_RS18665	0.75	+0.3
1,976,500	-		BBR_RS18665	0.76	+1.0
1,976,538	+		BBR_RS18665	0.80	-1.7
1,976,538	+		BBR_RS18665	0.80	-1.6