Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_507

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_505 and Ac3H11_506 are separated by 184 nucleotidesAc3H11_506 and Ac3H11_507 are separated by 87 nucleotidesAc3H11_507 and Ac3H11_508 are separated by 214 nucleotides Ac3H11_505 - Transcriptional regulator, TetR family, at 201,038 to 201,643 _505 Ac3H11_506 - biphenyl-2,3-diol 1,2-dioxygenase III-related protein, at 201,828 to 202,214 _506 Ac3H11_507 - Thymidine phosphorylase (EC 2.4.2.4), at 202,302 to 204,578 _507 Ac3H11_508 - Pyrophosphate-energized proton pump (EC 3.6.1.1), at 204,793 to 206,874 _508 Position (kb) 202 203 204 205Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 201.326 kb on + strand, within Ac3H11_505at 201.326 kb on + strand, within Ac3H11_505at 201.327 kb on - strand, within Ac3H11_505at 201.831 kb on + strandat 201.831 kb on + strandat 201.831 kb on + strandat 201.871 kb on + strand, within Ac3H11_506at 201.871 kb on + strand, within Ac3H11_506at 201.871 kb on + strand, within Ac3H11_506at 201.871 kb on + strand, within Ac3H11_506at 201.871 kb on + strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.875 kb on + strand, within Ac3H11_506at 201.875 kb on + strand, within Ac3H11_506at 201.875 kb on + strand, within Ac3H11_506at 201.875 kb on + strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.878 kb on - strand, within Ac3H11_506at 201.878 kb on - strand, within Ac3H11_506at 201.878 kb on - strand, within Ac3H11_506at 201.878 kb on - strand, within Ac3H11_506at 201.878 kb on - strand, within Ac3H11_506at 201.878 kb on - strand, within Ac3H11_506at 202.094 kb on - strand, within Ac3H11_506at 202.141 kb on + strand, within Ac3H11_506at 202.141 kb on + strand, within Ac3H11_506at 202.141 kb on + strand, within Ac3H11_506at 202.141 kb on + strand, within Ac3H11_506at 202.267 kb on + strandat 202.268 kb on - strandat 202.278 kb on + strandat 202.278 kb on + strandat 202.298 kb on + strandat 202.963 kb on + strand, within Ac3H11_507at 203.217 kb on + strand, within Ac3H11_507at 203.218 kb on - strand, within Ac3H11_507at 203.218 kb on - strand, within Ac3H11_507at 203.218 kb on - strand, within Ac3H11_507at 203.983 kb on + strand, within Ac3H11_507at 203.983 kb on + strand, within Ac3H11_507at 203.983 kb on + strand, within Ac3H11_507at 203.983 kb on + strand, within Ac3H11_507at 203.983 kb on + strand, within Ac3H11_507at 203.983 kb on + strand, within Ac3H11_507at 203.983 kb on + strand, within Ac3H11_507at 203.984 kb on - strand, within Ac3H11_507at 203.984 kb on - strand, within Ac3H11_507at 203.984 kb on - strand, within Ac3H11_507at 203.984 kb on - strand, within Ac3H11_507at 203.984 kb on - strand, within Ac3H11_507at 203.984 kb on - strand, within Ac3H11_507at 203.984 kb on - strand, within Ac3H11_507at 203.984 kb on - strand, within Ac3H11_507at 203.984 kb on - strand, within Ac3H11_507at 203.984 kb on - strand, within Ac3H11_507at 203.984 kb on - strand, within Ac3H11_507at 203.989 kb on + strand, within Ac3H11_507at 203.989 kb on + strand, within Ac3H11_507at 203.989 kb on + strand, within Ac3H11_507at 203.989 kb on + strand, within Ac3H11_507at 203.989 kb on + strand, within Ac3H11_507at 203.989 kb on + strand, within Ac3H11_507at 203.989 kb on + strand, within Ac3H11_507at 203.989 kb on + strand, within Ac3H11_507at 203.990 kb on - strand, within Ac3H11_507at 203.990 kb on - strand, within Ac3H11_507at 203.990 kb on - strand, within Ac3H11_507at 203.990 kb on - strand, within Ac3H11_507at 203.990 kb on - strand, within Ac3H11_507at 203.990 kb on - strand, within Ac3H11_507at 203.990 kb on - strand, within Ac3H11_507at 203.990 kb on - strand, within Ac3H11_507at 203.990 kb on - strand, within Ac3H11_507at 204.067 kb on + strand, within Ac3H11_507at 204.067 kb on + strand, within Ac3H11_507at 204.067 kb on + strand, within Ac3H11_507at 204.067 kb on + strand, within Ac3H11_507at 204.067 kb on + strand, within Ac3H11_507at 204.067 kb on + strand, within Ac3H11_507at 204.068 kb on - strand, within Ac3H11_507at 204.068 kb on - strand, within Ac3H11_507at 204.068 kb on - strand, within Ac3H11_507at 204.068 kb on - strand, within Ac3H11_507at 204.068 kb on - strand, within Ac3H11_507at 204.068 kb on - strand, within Ac3H11_507at 204.068 kb on - strand, within Ac3H11_507at 204.068 kb on - strand, within Ac3H11_507at 204.068 kb on - strand, within Ac3H11_507at 204.068 kb on - strand, within Ac3H11_507at 204.623 kb on - strandat 204.719 kb on + strandat 204.719 kb on + strandat 204.719 kb on + strandat 204.719 kb on + strandat 204.719 kb on + strandat 204.720 kb on - strandat 204.720 kb on - strandat 204.720 kb on - strandat 204.720 kb on - strandat 204.720 kb on - strandat 204.720 kb on - strandat 204.720 kb on - strandat 204.720 kb on - strandat 204.769 kb on - strandat 204.769 kb on - strandat 204.769 kb on - strandat 204.894 kb on - strandat 204.894 kb on - strandat 204.894 kb on - strandat 204.974 kb on + strandat 204.974 kb on + strandat 204.974 kb on + strandat 204.975 kb on - strandat 204.975 kb on - strandat 204.975 kb on - strandat 204.975 kb on - strandat 205.181 kb on + strand, within Ac3H11_508at 205.182 kb on - strand, within Ac3H11_508at 205.192 kb on - strand, within Ac3H11_508at 205.302 kb on - strand, within Ac3H11_508at 205.302 kb on - strand, within Ac3H11_508at 205.376 kb on + strand, within Ac3H11_508at 205.377 kb on - strand, within Ac3H11_508at 205.397 kb on + strand, within Ac3H11_508at 205.397 kb on + strand, within Ac3H11_508at 205.397 kb on + strand, within Ac3H11_508at 205.397 kb on + strand, within Ac3H11_508at 205.397 kb on + strand, within Ac3H11_508at 205.445 kb on + strand, within Ac3H11_508at 205.446 kb on - strand, within Ac3H11_508at 205.446 kb on - strand, within Ac3H11_508at 205.568 kb on + strand, within Ac3H11_508at 205.568 kb on + strand, within Ac3H11_508at 205.568 kb on + strand, within Ac3H11_508at 205.569 kb on - strand, within Ac3H11_508

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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201,326 + Ac3H11_505 0.48 -1.7
201,326 + Ac3H11_505 0.48 -1.6
201,327 - Ac3H11_505 0.48 +0.4
201,831 + +2.8
201,831 + +0.3
201,831 + -0.3
201,871 + Ac3H11_506 0.11 +0.6
201,871 + Ac3H11_506 0.11 +0.3
201,871 + Ac3H11_506 0.11 -0.4
201,871 + Ac3H11_506 0.11 -0.8
201,871 + Ac3H11_506 0.11 +3.0
201,872 - Ac3H11_506 0.11 -1.1
201,872 - Ac3H11_506 0.11 +2.1
201,872 - Ac3H11_506 0.11 -2.3
201,872 - Ac3H11_506 0.11 +0.4
201,872 - Ac3H11_506 0.11 -3.3
201,872 - Ac3H11_506 0.11 -3.2
201,872 - Ac3H11_506 0.11 -1.9
201,875 + Ac3H11_506 0.12 -0.5
201,875 + Ac3H11_506 0.12 +0.2
201,875 + Ac3H11_506 0.12 +1.1
201,875 + Ac3H11_506 0.12 -2.2
201,876 - Ac3H11_506 0.12 +0.5
201,876 - Ac3H11_506 0.12 -1.5
201,876 - Ac3H11_506 0.12 -0.3
201,876 - Ac3H11_506 0.12 -1.7
201,876 - Ac3H11_506 0.12 +1.7
201,876 - Ac3H11_506 0.12 +0.8
201,876 - Ac3H11_506 0.12 +0.6
201,876 - Ac3H11_506 0.12 -1.0
201,876 - Ac3H11_506 0.12 -1.4
201,876 - Ac3H11_506 0.12 +1.6
201,877 + Ac3H11_506 0.13 +0.4
201,877 + Ac3H11_506 0.13 +0.4
201,877 + Ac3H11_506 0.13 +1.6
201,877 + Ac3H11_506 0.13 +0.9
201,877 + Ac3H11_506 0.13 -2.3
201,877 + Ac3H11_506 0.13 +0.2
201,877 + Ac3H11_506 0.13 -0.5
201,877 + Ac3H11_506 0.13 +1.5
201,878 - Ac3H11_506 0.13 +0.4
201,878 - Ac3H11_506 0.13 -3.0
201,878 - Ac3H11_506 0.13 -0.3
201,878 - Ac3H11_506 0.13 +1.7
201,878 - Ac3H11_506 0.13 -0.9
201,878 - Ac3H11_506 0.13 -2.2
202,094 - Ac3H11_506 0.69 +1.2
202,141 + Ac3H11_506 0.81 -1.5
202,141 + Ac3H11_506 0.81 +1.1
202,141 + Ac3H11_506 0.81 +1.8
202,141 + Ac3H11_506 0.81 +0.2
202,267 + -0.5
202,268 - -0.1
202,278 + +0.4
202,278 + +1.7
202,298 + -0.2
202,963 + Ac3H11_507 0.29 -1.7
203,217 + Ac3H11_507 0.40 -3.0
203,218 - Ac3H11_507 0.40 +1.1
203,218 - Ac3H11_507 0.40 +1.4
203,218 - Ac3H11_507 0.40 -0.5
203,983 + Ac3H11_507 0.74 +1.6
203,983 + Ac3H11_507 0.74 +2.8
203,983 + Ac3H11_507 0.74 +1.1
203,983 + Ac3H11_507 0.74 -1.1
203,983 + Ac3H11_507 0.74 +0.7
203,983 + Ac3H11_507 0.74 +0.9
203,983 + Ac3H11_507 0.74 -2.7
203,984 - Ac3H11_507 0.74 -2.4
203,984 - Ac3H11_507 0.74 +0.8
203,984 - Ac3H11_507 0.74 -2.7
203,984 - Ac3H11_507 0.74 +0.3
203,984 - Ac3H11_507 0.74 -0.9
203,984 - Ac3H11_507 0.74 -1.4
203,984 - Ac3H11_507 0.74 -1.4
203,984 - Ac3H11_507 0.74 +1.1
203,984 - Ac3H11_507 0.74 +2.6
203,984 - Ac3H11_507 0.74 -0.1
203,984 - Ac3H11_507 0.74 +3.4
203,989 + Ac3H11_507 0.74 +2.5
203,989 + Ac3H11_507 0.74 -1.4
203,989 + Ac3H11_507 0.74 -0.2
203,989 + Ac3H11_507 0.74 -1.6
203,989 + Ac3H11_507 0.74 -0.2
203,989 + Ac3H11_507 0.74 +0.8
203,989 + Ac3H11_507 0.74 +2.4
203,989 + Ac3H11_507 0.74 +0.3
203,990 - Ac3H11_507 0.74 +3.2
203,990 - Ac3H11_507 0.74 +1.1
203,990 - Ac3H11_507 0.74 -2.4
203,990 - Ac3H11_507 0.74 -0.1
203,990 - Ac3H11_507 0.74 +0.9
203,990 - Ac3H11_507 0.74 -0.8
203,990 - Ac3H11_507 0.74 -2.4
203,990 - Ac3H11_507 0.74 +0.9
203,990 - Ac3H11_507 0.74 +0.8
204,067 + Ac3H11_507 0.78 +2.0
204,067 + Ac3H11_507 0.78 -0.4
204,067 + Ac3H11_507 0.78 -1.4
204,067 + Ac3H11_507 0.78 +1.3
204,067 + Ac3H11_507 0.78 -2.1
204,067 + Ac3H11_507 0.78 -0.6
204,068 - Ac3H11_507 0.78 -0.9
204,068 - Ac3H11_507 0.78 +0.9
204,068 - Ac3H11_507 0.78 +3.0
204,068 - Ac3H11_507 0.78 +0.9
204,068 - Ac3H11_507 0.78 +1.2
204,068 - Ac3H11_507 0.78 +1.0
204,068 - Ac3H11_507 0.78 +1.2
204,068 - Ac3H11_507 0.78 +0.9
204,068 - Ac3H11_507 0.78 +0.9
204,068 - Ac3H11_507 0.78 -0.5
204,623 - -0.0
204,719 + -1.3
204,719 + -2.8
204,719 + +1.5
204,719 + +1.1
204,719 + -0.3
204,720 - +2.1
204,720 - -1.2
204,720 - +0.7
204,720 - -0.2
204,720 - -1.0
204,720 - +1.1
204,720 - +1.9
204,720 - -0.6
204,769 - +0.2
204,769 - -1.9
204,769 - -0.2
204,894 - +1.6
204,894 - -0.2
204,894 - +0.2
204,974 + -1.4
204,974 + -0.7
204,974 + +0.8
204,975 - -0.0
204,975 - +0.3
204,975 - +1.8
204,975 - +0.4
205,181 + Ac3H11_508 0.19 -1.0
205,182 - Ac3H11_508 0.19 -0.2
205,192 - Ac3H11_508 0.19 -1.5
205,302 - Ac3H11_508 0.24 +1.2
205,302 - Ac3H11_508 0.24 +0.8
205,376 + Ac3H11_508 0.28 -2.3
205,377 - Ac3H11_508 0.28 -0.1
205,397 + Ac3H11_508 0.29 -0.2
205,397 + Ac3H11_508 0.29 +2.4
205,397 + Ac3H11_508 0.29 -0.1
205,397 + Ac3H11_508 0.29 -0.5
205,397 + Ac3H11_508 0.29 +0.4
205,445 + Ac3H11_508 0.31 +0.2
205,446 - Ac3H11_508 0.31 +3.6
205,446 - Ac3H11_508 0.31 +0.1
205,568 + Ac3H11_508 0.37 -3.3
205,568 + Ac3H11_508 0.37 +0.2
205,568 + Ac3H11_508 0.37 -0.6
205,569 - Ac3H11_508 0.37 -1.0

Or see this region's nucleotide sequence