Experiment: copper (II) chloride 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_5002 and Ac3H11_5003 overlap by 4 nucleotides Ac3H11_5003 and Ac3H11_5004 are separated by 37 nucleotides
Ac3H11_5002 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 172,217 to 174,142
_5002
Ac3H11_5003 - putative transmembrane protein, at 174,139 to 174,657
_5003
Ac3H11_5004 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 174,695 to 176,593
_5004
Position (kb) 174
175 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 173.394 kb on + strand, within Ac3H11_5002 at 173.394 kb on + strand, within Ac3H11_5002 at 173.395 kb on - strand, within Ac3H11_5002 at 173.395 kb on - strand, within Ac3H11_5002 at 173.658 kb on + strand, within Ac3H11_5002 at 173.658 kb on + strand, within Ac3H11_5002 at 173.658 kb on + strand, within Ac3H11_5002 at 173.658 kb on + strand, within Ac3H11_5002 at 173.658 kb on + strand, within Ac3H11_5002 at 173.658 kb on + strand, within Ac3H11_5002 at 173.659 kb on - strand, within Ac3H11_5002 at 173.659 kb on - strand, within Ac3H11_5002 at 173.659 kb on - strand, within Ac3H11_5002 at 173.659 kb on - strand, within Ac3H11_5002 at 173.659 kb on - strand, within Ac3H11_5002 at 173.805 kb on + strand, within Ac3H11_5002 at 173.805 kb on + strand, within Ac3H11_5002 at 173.805 kb on + strand, within Ac3H11_5002 at 173.805 kb on + strand, within Ac3H11_5002 at 173.805 kb on + strand, within Ac3H11_5002 at 173.806 kb on - strand, within Ac3H11_5002 at 173.806 kb on - strand, within Ac3H11_5002 at 173.806 kb on - strand, within Ac3H11_5002 at 173.806 kb on - strand, within Ac3H11_5002 at 173.806 kb on - strand, within Ac3H11_5002 at 173.835 kb on + strand, within Ac3H11_5002 at 173.836 kb on - strand, within Ac3H11_5002 at 173.836 kb on - strand, within Ac3H11_5002 at 173.836 kb on - strand, within Ac3H11_5002 at 173.994 kb on + strand at 173.995 kb on - strand at 173.995 kb on - strand at 173.995 kb on - strand at 174.566 kb on + strand, within Ac3H11_5003 at 174.566 kb on + strand, within Ac3H11_5003 at 174.566 kb on + strand, within Ac3H11_5003 at 174.566 kb on + strand, within Ac3H11_5003 at 174.567 kb on - strand, within Ac3H11_5003 at 174.567 kb on - strand at 174.567 kb on - strand, within Ac3H11_5003 at 174.567 kb on - strand, within Ac3H11_5003 at 174.567 kb on - strand, within Ac3H11_5003 at 174.567 kb on - strand, within Ac3H11_5003 at 174.567 kb on - strand, within Ac3H11_5003 at 174.670 kb on + strand at 174.670 kb on + strand at 174.705 kb on + strand at 174.705 kb on + strand at 174.705 kb on + strand at 174.706 kb on - strand at 174.723 kb on + strand at 174.724 kb on - strand at 174.724 kb on - strand at 174.804 kb on + strand at 174.804 kb on + strand at 174.804 kb on + strand at 174.804 kb on + strand at 174.804 kb on + strand at 174.804 kb on + strand at 174.805 kb on - strand at 174.805 kb on - strand at 174.805 kb on - strand at 174.805 kb on - strand at 174.805 kb on - strand at 174.846 kb on + strand at 174.846 kb on + strand at 174.846 kb on + strand at 174.846 kb on + strand at 174.846 kb on + strand at 174.846 kb on + strand at 174.846 kb on + strand at 174.847 kb on - strand at 174.847 kb on - strand at 174.847 kb on - strand at 174.847 kb on - strand at 174.847 kb on - strand at 174.931 kb on - strand, within Ac3H11_5004 at 175.060 kb on - strand, within Ac3H11_5004 at 175.307 kb on + strand, within Ac3H11_5004 at 175.345 kb on - strand, within Ac3H11_5004 at 175.362 kb on + strand, within Ac3H11_5004 at 175.410 kb on + strand, within Ac3H11_5004 at 175.521 kb on + strand, within Ac3H11_5004 at 175.522 kb on - strand, within Ac3H11_5004 at 175.522 kb on - strand, within Ac3H11_5004 at 175.522 kb on - strand, within Ac3H11_5004 at 175.522 kb on - strand, within Ac3H11_5004 at 175.560 kb on + strand, within Ac3H11_5004
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM remove 173,394 + Ac3H11_5002 0.61 -2.8 173,394 + Ac3H11_5002 0.61 -1.2 173,395 - Ac3H11_5002 0.61 +0.1 173,395 - Ac3H11_5002 0.61 +2.6 173,658 + Ac3H11_5002 0.75 +0.3 173,658 + Ac3H11_5002 0.75 +0.4 173,658 + Ac3H11_5002 0.75 -0.7 173,658 + Ac3H11_5002 0.75 -0.7 173,658 + Ac3H11_5002 0.75 +2.6 173,658 + Ac3H11_5002 0.75 -1.9 173,659 - Ac3H11_5002 0.75 -0.5 173,659 - Ac3H11_5002 0.75 +0.8 173,659 - Ac3H11_5002 0.75 -0.5 173,659 - Ac3H11_5002 0.75 +0.1 173,659 - Ac3H11_5002 0.75 -0.6 173,805 + Ac3H11_5002 0.82 +2.0 173,805 + Ac3H11_5002 0.82 +0.1 173,805 + Ac3H11_5002 0.82 -1.8 173,805 + Ac3H11_5002 0.82 -0.8 173,805 + Ac3H11_5002 0.82 +1.6 173,806 - Ac3H11_5002 0.83 +1.9 173,806 - Ac3H11_5002 0.83 -1.3 173,806 - Ac3H11_5002 0.83 -0.9 173,806 - Ac3H11_5002 0.83 +1.2 173,806 - Ac3H11_5002 0.83 +0.2 173,835 + Ac3H11_5002 0.84 +0.6 173,836 - Ac3H11_5002 0.84 +0.2 173,836 - Ac3H11_5002 0.84 -2.4 173,836 - Ac3H11_5002 0.84 +0.8 173,994 + +0.8 173,995 - -2.6 173,995 - -2.7 173,995 - -2.2 174,566 + Ac3H11_5003 0.82 -0.8 174,566 + Ac3H11_5003 0.82 +1.7 174,566 + Ac3H11_5003 0.82 +0.2 174,566 + Ac3H11_5003 0.82 +1.1 174,567 - Ac3H11_5003 0.82 -0.7 174,567 - +1.6 174,567 - Ac3H11_5003 0.82 -0.1 174,567 - Ac3H11_5003 0.82 -0.9 174,567 - Ac3H11_5003 0.82 -1.2 174,567 - Ac3H11_5003 0.82 +1.0 174,567 - Ac3H11_5003 0.82 +0.6 174,670 + -0.2 174,670 + +1.4 174,705 + -1.8 174,705 + -1.8 174,705 + +1.3 174,706 - +0.3 174,723 + -2.4 174,724 - -0.4 174,724 - -1.9 174,804 + -1.7 174,804 + -0.2 174,804 + -2.4 174,804 + +1.5 174,804 + +0.8 174,804 + -1.6 174,805 - +0.5 174,805 - +0.8 174,805 - +1.1 174,805 - +0.1 174,805 - +0.4 174,846 + -1.1 174,846 + -0.2 174,846 + +1.0 174,846 + -0.1 174,846 + -0.6 174,846 + -0.5 174,846 + +0.2 174,847 - -0.4 174,847 - -1.2 174,847 - -1.8 174,847 - +0.4 174,847 - +0.4 174,931 - Ac3H11_5004 0.12 +0.1 175,060 - Ac3H11_5004 0.19 -0.6 175,307 + Ac3H11_5004 0.32 -2.6 175,345 - Ac3H11_5004 0.34 -1.6 175,362 + Ac3H11_5004 0.35 +0.1 175,410 + Ac3H11_5004 0.38 +0.9 175,521 + Ac3H11_5004 0.43 -3.1 175,522 - Ac3H11_5004 0.44 -1.1 175,522 - Ac3H11_5004 0.44 -0.4 175,522 - Ac3H11_5004 0.44 +1.4 175,522 - Ac3H11_5004 0.44 +1.8 175,560 + Ac3H11_5004 0.46 -0.9
Or see this region's nucleotide sequence