Experiment: copper (II) chloride 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4204 and Ac3H11_4205 are separated by 365 nucleotides Ac3H11_4205 and Ac3H11_4206 are separated by 120 nucleotides Ac3H11_4206 and Ac3H11_4207 are separated by 114 nucleotides Ac3H11_4207 and Ac3H11_4208 are separated by 401 nucleotides
Ac3H11_4204 - hypothetical protein, at 475,078 to 475,260
_4204
Ac3H11_4205 - hypothetical protein, at 475,626 to 475,883
_4205
Ac3H11_4206 - SAM-dependent methyltransferases, at 476,004 to 476,624
_4206
Ac3H11_4207 - Flagellar hook-basal body complex protein FliE, at 476,739 to 476,858
_4207
Ac3H11_4208 - Putative type II restriction enzyme NmeDIP (EC 3.1.21.4) (Endonuclease NmeDIP) (R.NmeDIP), at 477,260 to 478,243
_4208
Position (kb) 476
477 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 475.081 kb on + strand at 475.081 kb on + strand at 475.082 kb on - strand at 475.082 kb on - strand at 475.111 kb on + strand, within Ac3H11_4204 at 475.111 kb on + strand, within Ac3H11_4204 at 475.112 kb on - strand, within Ac3H11_4204 at 475.112 kb on - strand, within Ac3H11_4204 at 475.112 kb on - strand, within Ac3H11_4204 at 475.112 kb on - strand, within Ac3H11_4204 at 475.308 kb on + strand at 475.309 kb on - strand at 475.316 kb on + strand at 475.316 kb on + strand at 475.317 kb on - strand at 475.317 kb on - strand at 475.317 kb on - strand at 475.317 kb on - strand at 475.542 kb on + strand at 475.542 kb on + strand at 475.542 kb on + strand at 475.543 kb on - strand at 475.543 kb on - strand at 475.557 kb on - strand at 475.704 kb on + strand, within Ac3H11_4205 at 475.704 kb on + strand, within Ac3H11_4205 at 475.705 kb on - strand, within Ac3H11_4205 at 475.705 kb on - strand, within Ac3H11_4205 at 475.705 kb on - strand, within Ac3H11_4205 at 475.705 kb on - strand, within Ac3H11_4205 at 475.766 kb on - strand, within Ac3H11_4205 at 475.852 kb on + strand, within Ac3H11_4205 at 475.852 kb on + strand, within Ac3H11_4205 at 475.852 kb on + strand, within Ac3H11_4205 at 475.852 kb on + strand, within Ac3H11_4205 at 475.852 kb on + strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.853 kb on - strand, within Ac3H11_4205 at 475.856 kb on + strand, within Ac3H11_4205 at 475.856 kb on + strand, within Ac3H11_4205 at 475.857 kb on - strand, within Ac3H11_4205 at 475.857 kb on - strand, within Ac3H11_4205 at 475.882 kb on - strand at 475.891 kb on + strand at 475.891 kb on + strand at 475.972 kb on + strand at 475.973 kb on - strand at 476.032 kb on + strand at 476.032 kb on + strand at 476.032 kb on + strand at 476.032 kb on + strand at 476.032 kb on + strand at 476.032 kb on + strand at 476.032 kb on + strand at 476.032 kb on + strand at 476.033 kb on - strand at 476.137 kb on + strand, within Ac3H11_4206 at 476.138 kb on - strand, within Ac3H11_4206 at 476.242 kb on + strand, within Ac3H11_4206 at 476.242 kb on + strand, within Ac3H11_4206 at 476.242 kb on + strand, within Ac3H11_4206 at 476.242 kb on + strand, within Ac3H11_4206 at 476.243 kb on - strand, within Ac3H11_4206 at 476.243 kb on - strand, within Ac3H11_4206 at 476.243 kb on - strand, within Ac3H11_4206 at 476.243 kb on - strand, within Ac3H11_4206 at 476.280 kb on + strand, within Ac3H11_4206 at 476.281 kb on - strand, within Ac3H11_4206 at 476.298 kb on + strand, within Ac3H11_4206 at 476.298 kb on + strand, within Ac3H11_4206 at 476.298 kb on + strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.305 kb on + strand, within Ac3H11_4206 at 476.305 kb on + strand, within Ac3H11_4206 at 476.305 kb on + strand, within Ac3H11_4206 at 476.306 kb on - strand, within Ac3H11_4206 at 476.412 kb on + strand, within Ac3H11_4206 at 476.412 kb on + strand, within Ac3H11_4206 at 476.412 kb on + strand, within Ac3H11_4206 at 476.413 kb on - strand, within Ac3H11_4206 at 476.413 kb on - strand, within Ac3H11_4206 at 476.593 kb on + strand at 476.593 kb on + strand at 476.593 kb on + strand at 476.593 kb on + strand at 476.624 kb on + strand at 476.624 kb on + strand at 476.625 kb on - strand at 476.643 kb on + strand at 476.643 kb on + strand at 476.643 kb on + strand at 476.643 kb on + strand at 476.643 kb on + strand at 476.644 kb on - strand at 476.644 kb on - strand at 476.644 kb on - strand at 476.644 kb on - strand at 476.685 kb on + strand at 476.686 kb on - strand at 476.686 kb on - strand at 476.686 kb on - strand at 476.698 kb on + strand at 476.698 kb on + strand at 476.699 kb on - strand at 476.757 kb on + strand, within Ac3H11_4207 at 476.757 kb on + strand, within Ac3H11_4207 at 476.757 kb on + strand, within Ac3H11_4207 at 476.757 kb on + strand, within Ac3H11_4207 at 476.758 kb on - strand, within Ac3H11_4207 at 476.758 kb on - strand, within Ac3H11_4207 at 476.758 kb on - strand, within Ac3H11_4207 at 476.767 kb on + strand, within Ac3H11_4207 at 476.767 kb on + strand, within Ac3H11_4207 at 476.767 kb on + strand, within Ac3H11_4207 at 476.768 kb on - strand, within Ac3H11_4207 at 476.861 kb on + strand at 476.861 kb on + strand at 476.861 kb on + strand at 476.862 kb on - strand at 476.862 kb on - strand at 476.862 kb on - strand at 476.862 kb on - strand at 476.889 kb on - strand at 476.982 kb on + strand at 476.983 kb on - strand at 477.015 kb on + strand at 477.039 kb on + strand at 477.093 kb on + strand at 477.093 kb on + strand at 477.093 kb on + strand at 477.093 kb on + strand at 477.093 kb on + strand at 477.094 kb on - strand at 477.094 kb on - strand at 477.094 kb on - strand at 477.094 kb on - strand at 477.094 kb on - strand at 477.114 kb on + strand at 477.115 kb on - strand at 477.159 kb on + strand at 477.261 kb on + strand at 477.346 kb on - strand at 477.354 kb on + strand at 477.510 kb on + strand, within Ac3H11_4208 at 477.510 kb on + strand, within Ac3H11_4208 at 477.510 kb on + strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM remove 475,081 + +1.5 475,081 + -1.4 475,082 - +2.1 475,082 - +1.2 475,111 + Ac3H11_4204 0.18 -0.5 475,111 + Ac3H11_4204 0.18 +1.2 475,112 - Ac3H11_4204 0.19 +0.3 475,112 - Ac3H11_4204 0.19 -1.7 475,112 - Ac3H11_4204 0.19 +0.5 475,112 - Ac3H11_4204 0.19 +1.3 475,308 + +0.0 475,309 - -0.9 475,316 + +0.9 475,316 + +1.1 475,317 - +0.6 475,317 - +0.8 475,317 - +2.2 475,317 - -0.1 475,542 + +0.8 475,542 + -1.7 475,542 + +0.6 475,543 - -0.1 475,543 - +1.0 475,557 - +0.4 475,704 + Ac3H11_4205 0.30 +1.9 475,704 + Ac3H11_4205 0.30 +0.4 475,705 - Ac3H11_4205 0.31 +0.5 475,705 - Ac3H11_4205 0.31 -1.5 475,705 - Ac3H11_4205 0.31 -1.7 475,705 - Ac3H11_4205 0.31 +0.3 475,766 - Ac3H11_4205 0.54 -0.8 475,852 + Ac3H11_4205 0.88 +1.5 475,852 + Ac3H11_4205 0.88 +0.2 475,852 + Ac3H11_4205 0.88 -2.4 475,852 + Ac3H11_4205 0.88 -1.9 475,852 + Ac3H11_4205 0.88 -1.5 475,853 - Ac3H11_4205 0.88 -0.2 475,853 - Ac3H11_4205 0.88 -2.4 475,853 - Ac3H11_4205 0.88 +0.8 475,853 - Ac3H11_4205 0.88 -1.6 475,853 - Ac3H11_4205 0.88 +2.2 475,853 - Ac3H11_4205 0.88 +0.6 475,853 - Ac3H11_4205 0.88 +1.2 475,853 - Ac3H11_4205 0.88 +2.6 475,853 - Ac3H11_4205 0.88 -3.1 475,853 - Ac3H11_4205 0.88 +0.6 475,853 - Ac3H11_4205 0.88 -0.4 475,856 + Ac3H11_4205 0.89 -1.8 475,856 + Ac3H11_4205 0.89 -0.1 475,857 - Ac3H11_4205 0.90 +0.2 475,857 - Ac3H11_4205 0.90 -0.1 475,882 - -0.4 475,891 + -2.4 475,891 + -1.7 475,972 + -1.0 475,973 - -0.9 476,032 + -0.1 476,032 + +0.8 476,032 + -0.1 476,032 + +0.9 476,032 + -0.7 476,032 + +1.7 476,032 + +0.2 476,032 + +1.3 476,033 - -0.3 476,137 + Ac3H11_4206 0.21 +0.8 476,138 - Ac3H11_4206 0.22 -1.0 476,242 + Ac3H11_4206 0.38 +0.9 476,242 + Ac3H11_4206 0.38 +0.1 476,242 + Ac3H11_4206 0.38 -0.5 476,242 + Ac3H11_4206 0.38 -2.4 476,243 - Ac3H11_4206 0.38 +0.6 476,243 - Ac3H11_4206 0.38 -0.6 476,243 - Ac3H11_4206 0.38 -1.2 476,243 - Ac3H11_4206 0.38 -0.7 476,280 + Ac3H11_4206 0.44 -0.6 476,281 - Ac3H11_4206 0.45 -0.9 476,298 + Ac3H11_4206 0.47 -0.4 476,298 + Ac3H11_4206 0.47 -0.5 476,298 + Ac3H11_4206 0.47 -0.2 476,299 - Ac3H11_4206 0.48 +1.8 476,299 - Ac3H11_4206 0.48 -3.2 476,299 - Ac3H11_4206 0.48 -2.2 476,299 - Ac3H11_4206 0.48 -2.1 476,299 - Ac3H11_4206 0.48 +0.2 476,299 - Ac3H11_4206 0.48 +0.5 476,305 + Ac3H11_4206 0.48 +1.4 476,305 + Ac3H11_4206 0.48 -1.7 476,305 + Ac3H11_4206 0.48 +1.0 476,306 - Ac3H11_4206 0.49 -0.9 476,412 + Ac3H11_4206 0.66 +0.2 476,412 + Ac3H11_4206 0.66 -0.1 476,412 + Ac3H11_4206 0.66 -2.8 476,413 - Ac3H11_4206 0.66 +0.3 476,413 - Ac3H11_4206 0.66 -3.4 476,593 + +1.1 476,593 + +0.8 476,593 + -0.1 476,593 + -0.1 476,624 + -0.4 476,624 + +1.2 476,625 - +1.4 476,643 + -1.2 476,643 + -1.4 476,643 + -2.0 476,643 + +1.4 476,643 + +0.6 476,644 - -2.5 476,644 - +2.5 476,644 - -1.4 476,644 - +1.8 476,685 + +1.3 476,686 - -2.2 476,686 - -0.0 476,686 - -1.5 476,698 + -1.8 476,698 + -1.0 476,699 - +0.5 476,757 + Ac3H11_4207 0.15 -0.1 476,757 + Ac3H11_4207 0.15 -2.5 476,757 + Ac3H11_4207 0.15 -1.4 476,757 + Ac3H11_4207 0.15 -1.1 476,758 - Ac3H11_4207 0.16 +1.6 476,758 - Ac3H11_4207 0.16 -1.7 476,758 - Ac3H11_4207 0.16 +2.0 476,767 + Ac3H11_4207 0.23 -2.0 476,767 + Ac3H11_4207 0.23 +0.6 476,767 + Ac3H11_4207 0.23 -1.4 476,768 - Ac3H11_4207 0.24 +1.8 476,861 + -0.0 476,861 + +1.6 476,861 + +1.2 476,862 - -0.7 476,862 - +1.3 476,862 - -1.0 476,862 - +0.3 476,889 - -0.5 476,982 + -1.6 476,983 - +0.9 477,015 + +0.1 477,039 + +0.3 477,093 + +1.5 477,093 + +1.9 477,093 + -1.8 477,093 + -1.7 477,093 + +0.7 477,094 - +0.4 477,094 - +2.2 477,094 - +0.6 477,094 - -2.2 477,094 - +3.1 477,114 + -0.4 477,115 - -1.9 477,159 + -0.3 477,261 + +0.1 477,346 - +0.8 477,354 + +1.0 477,510 + Ac3H11_4208 0.25 +1.3 477,510 + Ac3H11_4208 0.25 -0.6 477,510 + Ac3H11_4208 0.25 +1.0 477,511 - Ac3H11_4208 0.26 -1.3 477,511 - Ac3H11_4208 0.26 +1.2 477,511 - Ac3H11_4208 0.26 +2.2 477,511 - Ac3H11_4208 0.26 -0.8 477,511 - Ac3H11_4208 0.26 +0.7 477,511 - Ac3H11_4208 0.26 -0.3 477,511 - Ac3H11_4208 0.26 -1.1 477,514 + Ac3H11_4208 0.26 -0.2 477,514 + Ac3H11_4208 0.26 +0.8 477,514 + Ac3H11_4208 0.26 -0.2 477,514 + Ac3H11_4208 0.26 +0.8 477,514 + Ac3H11_4208 0.26 +0.9 477,515 - Ac3H11_4208 0.26 +0.7 477,515 - Ac3H11_4208 0.26 +0.3 477,515 - Ac3H11_4208 0.26 -2.5 477,515 - Ac3H11_4208 0.26 +2.1 477,515 - Ac3H11_4208 0.26 -0.7 477,515 - Ac3H11_4208 0.26 -0.7
Or see this region's nucleotide sequence