Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4175

Experiment: copper (II) chloride 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_4173 and Ac3H11_4174 overlap by 47 nucleotidesAc3H11_4174 and Ac3H11_4175 are separated by 45 nucleotidesAc3H11_4175 and Ac3H11_4176 are separated by 60 nucleotides Ac3H11_4173 - Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster, at 428,240 to 429,580 _4173 Ac3H11_4174 - TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter, at 429,534 to 430,364 _4174 Ac3H11_4175 - TRAP-type C4-dicarboxylate transport system, large permease component, at 430,410 to 431,675 _4175 Ac3H11_4176 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 431,736 to 432,758 _4176 Position (kb) 430 431 432Strain fitness (log2 ratio) -2 -1 0 1 2 3at 429.655 kb on + strand, within Ac3H11_4174at 429.656 kb on - strand, within Ac3H11_4174at 429.685 kb on + strand, within Ac3H11_4174at 429.894 kb on + strand, within Ac3H11_4174at 429.895 kb on - strand, within Ac3H11_4174at 429.912 kb on + strand, within Ac3H11_4174at 429.936 kb on + strand, within Ac3H11_4174at 429.936 kb on + strand, within Ac3H11_4174at 430.491 kb on + strandat 430.491 kb on + strandat 430.491 kb on + strandat 430.491 kb on + strandat 430.492 kb on - strandat 430.492 kb on - strandat 430.492 kb on - strandat 430.492 kb on - strandat 430.563 kb on + strand, within Ac3H11_4175at 430.563 kb on + strand, within Ac3H11_4175at 430.563 kb on + strand, within Ac3H11_4175at 430.563 kb on + strand, within Ac3H11_4175at 430.564 kb on - strand, within Ac3H11_4175at 430.564 kb on - strand, within Ac3H11_4175at 430.564 kb on - strand, within Ac3H11_4175at 430.687 kb on - strand, within Ac3H11_4175at 430.794 kb on + strand, within Ac3H11_4175at 430.794 kb on + strand, within Ac3H11_4175at 430.827 kb on + strand, within Ac3H11_4175at 430.827 kb on + strand, within Ac3H11_4175at 430.828 kb on - strand, within Ac3H11_4175at 430.878 kb on + strand, within Ac3H11_4175at 430.879 kb on - strand, within Ac3H11_4175at 430.879 kb on - strand, within Ac3H11_4175at 430.879 kb on - strand, within Ac3H11_4175at 430.989 kb on + strand, within Ac3H11_4175at 430.989 kb on + strand, within Ac3H11_4175at 430.990 kb on - strand, within Ac3H11_4175at 431.163 kb on + strand, within Ac3H11_4175at 431.164 kb on - strand, within Ac3H11_4175at 431.164 kb on - strand, within Ac3H11_4175at 431.224 kb on - strand, within Ac3H11_4175at 431.224 kb on - strand, within Ac3H11_4175at 431.224 kb on - strand, within Ac3H11_4175at 431.284 kb on - strand, within Ac3H11_4175at 431.454 kb on + strand, within Ac3H11_4175at 431.454 kb on + strand, within Ac3H11_4175at 431.454 kb on + strand, within Ac3H11_4175at 431.455 kb on - strand, within Ac3H11_4175at 431.455 kb on - strand, within Ac3H11_4175at 431.455 kb on - strand, within Ac3H11_4175at 431.674 kb on - strandat 431.674 kb on - strandat 431.674 kb on - strandat 432.100 kb on - strand, within Ac3H11_4176at 432.170 kb on - strand, within Ac3H11_4176at 432.304 kb on - strand, within Ac3H11_4176at 432.316 kb on - strand, within Ac3H11_4176

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
remove
429,655 + Ac3H11_4174 0.15 +0.8
429,656 - Ac3H11_4174 0.15 +2.7
429,685 + Ac3H11_4174 0.18 +0.3
429,894 + Ac3H11_4174 0.43 +0.3
429,895 - Ac3H11_4174 0.43 +1.7
429,912 + Ac3H11_4174 0.45 +2.2
429,936 + Ac3H11_4174 0.48 +0.5
429,936 + Ac3H11_4174 0.48 -0.1
430,491 + -1.3
430,491 + -0.9
430,491 + +0.8
430,491 + -1.4
430,492 - -2.0
430,492 - -1.0
430,492 - -0.3
430,492 - +0.1
430,563 + Ac3H11_4175 0.12 -0.2
430,563 + Ac3H11_4175 0.12 -2.0
430,563 + Ac3H11_4175 0.12 -1.1
430,563 + Ac3H11_4175 0.12 -1.1
430,564 - Ac3H11_4175 0.12 +0.8
430,564 - Ac3H11_4175 0.12 -1.0
430,564 - Ac3H11_4175 0.12 +0.0
430,687 - Ac3H11_4175 0.22 +0.9
430,794 + Ac3H11_4175 0.30 -0.4
430,794 + Ac3H11_4175 0.30 +1.8
430,827 + Ac3H11_4175 0.33 -1.4
430,827 + Ac3H11_4175 0.33 -0.8
430,828 - Ac3H11_4175 0.33 +0.6
430,878 + Ac3H11_4175 0.37 -1.6
430,879 - Ac3H11_4175 0.37 +1.0
430,879 - Ac3H11_4175 0.37 +1.6
430,879 - Ac3H11_4175 0.37 +0.8
430,989 + Ac3H11_4175 0.46 +1.2
430,989 + Ac3H11_4175 0.46 +0.6
430,990 - Ac3H11_4175 0.46 -1.7
431,163 + Ac3H11_4175 0.59 +3.4
431,164 - Ac3H11_4175 0.60 -0.1
431,164 - Ac3H11_4175 0.60 +1.6
431,224 - Ac3H11_4175 0.64 +0.9
431,224 - Ac3H11_4175 0.64 -0.1
431,224 - Ac3H11_4175 0.64 -0.9
431,284 - Ac3H11_4175 0.69 -0.3
431,454 + Ac3H11_4175 0.82 +1.3
431,454 + Ac3H11_4175 0.82 +1.7
431,454 + Ac3H11_4175 0.82 -1.6
431,455 - Ac3H11_4175 0.83 -1.4
431,455 - Ac3H11_4175 0.83 +0.5
431,455 - Ac3H11_4175 0.83 -0.4
431,674 - -0.9
431,674 - +1.7
431,674 - -1.7
432,100 - Ac3H11_4176 0.36 -0.4
432,170 - Ac3H11_4176 0.42 +2.4
432,304 - Ac3H11_4176 0.56 -1.2
432,316 - Ac3H11_4176 0.57 -0.0

Or see this region's nucleotide sequence