Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3950

Experiment: copper (II) chloride 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_3949 and Ac3H11_3950 are separated by 133 nucleotidesAc3H11_3950 and Ac3H11_3951 are separated by 77 nucleotides Ac3H11_3949 - Outer membrane stress sensor protease DegS, at 172,121 to 173,644 _3949 Ac3H11_3950 - Catalase (EC 1.11.1.6), at 173,778 to 174,767 _3950 Ac3H11_3951 - Aldose 1-epimerase (EC 5.1.3.3), at 174,845 to 175,957 _3951 Position (kb) 173 174 175Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 172.800 kb on + strand, within Ac3H11_3949at 172.818 kb on + strand, within Ac3H11_3949at 172.818 kb on + strand, within Ac3H11_3949at 172.818 kb on + strand, within Ac3H11_3949at 172.818 kb on + strand, within Ac3H11_3949at 172.818 kb on + strand, within Ac3H11_3949at 172.819 kb on - strand, within Ac3H11_3949at 172.819 kb on - strand, within Ac3H11_3949at 172.819 kb on - strand, within Ac3H11_3949at 172.819 kb on - strand, within Ac3H11_3949at 173.310 kb on + strand, within Ac3H11_3949at 173.650 kb on + strandat 173.650 kb on + strandat 173.651 kb on - strandat 173.651 kb on - strandat 173.652 kb on + strandat 173.652 kb on + strandat 173.652 kb on + strandat 173.652 kb on + strandat 173.653 kb on - strandat 173.653 kb on - strandat 173.653 kb on - strandat 173.653 kb on - strandat 173.653 kb on - strandat 173.653 kb on - strandat 173.653 kb on - strandat 173.653 kb on - strandat 173.701 kb on + strandat 173.712 kb on + strandat 173.813 kb on - strandat 173.965 kb on + strand, within Ac3H11_3950at 173.965 kb on + strand, within Ac3H11_3950at 173.966 kb on - strand, within Ac3H11_3950at 174.529 kb on + strand, within Ac3H11_3950at 174.754 kb on + strandat 174.754 kb on + strandat 174.755 kb on - strandat 174.755 kb on - strandat 174.755 kb on - strandat 174.847 kb on - strandat 174.847 kb on - strandat 174.864 kb on + strandat 175.053 kb on + strand, within Ac3H11_3951at 175.054 kb on - strand, within Ac3H11_3951at 175.054 kb on - strand, within Ac3H11_3951at 175.054 kb on - strand, within Ac3H11_3951at 175.054 kb on - strand, within Ac3H11_3951at 175.200 kb on + strand, within Ac3H11_3951at 175.201 kb on - strand, within Ac3H11_3951at 175.201 kb on - strand, within Ac3H11_3951at 175.347 kb on + strand, within Ac3H11_3951at 175.348 kb on - strand, within Ac3H11_3951at 175.362 kb on - strand, within Ac3H11_3951at 175.456 kb on + strand, within Ac3H11_3951at 175.761 kb on + strand, within Ac3H11_3951

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
remove
172,800 + Ac3H11_3949 0.45 +0.6
172,818 + Ac3H11_3949 0.46 -0.7
172,818 + Ac3H11_3949 0.46 -0.8
172,818 + Ac3H11_3949 0.46 +0.7
172,818 + Ac3H11_3949 0.46 -0.7
172,818 + Ac3H11_3949 0.46 -0.1
172,819 - Ac3H11_3949 0.46 -3.1
172,819 - Ac3H11_3949 0.46 +0.9
172,819 - Ac3H11_3949 0.46 -0.7
172,819 - Ac3H11_3949 0.46 -0.8
173,310 + Ac3H11_3949 0.78 +0.7
173,650 + -0.4
173,650 + +0.5
173,651 - -0.5
173,651 - -0.7
173,652 + +0.4
173,652 + +0.4
173,652 + -0.5
173,652 + -3.6
173,653 - +0.1
173,653 - +0.3
173,653 - -1.0
173,653 - +1.6
173,653 - +1.0
173,653 - -0.8
173,653 - -0.4
173,653 - -1.3
173,701 + -0.5
173,712 + +1.4
173,813 - -1.3
173,965 + Ac3H11_3950 0.19 -1.8
173,965 + Ac3H11_3950 0.19 -0.3
173,966 - Ac3H11_3950 0.19 +1.3
174,529 + Ac3H11_3950 0.76 -0.7
174,754 + -0.1
174,754 + +0.2
174,755 - +0.8
174,755 - -1.4
174,755 - +0.5
174,847 - +1.6
174,847 - -2.8
174,864 + -0.9
175,053 + Ac3H11_3951 0.19 +0.0
175,054 - Ac3H11_3951 0.19 +3.1
175,054 - Ac3H11_3951 0.19 +0.2
175,054 - Ac3H11_3951 0.19 -1.2
175,054 - Ac3H11_3951 0.19 -0.2
175,200 + Ac3H11_3951 0.32 +1.6
175,201 - Ac3H11_3951 0.32 +2.2
175,201 - Ac3H11_3951 0.32 +0.4
175,347 + Ac3H11_3951 0.45 -1.2
175,348 - Ac3H11_3951 0.45 +0.0
175,362 - Ac3H11_3951 0.46 +2.8
175,456 + Ac3H11_3951 0.55 +0.3
175,761 + Ac3H11_3951 0.82 -1.9

Or see this region's nucleotide sequence