Experiment: copper (II) chloride 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3934 and Ac3H11_4224 are separated by 54 nucleotides Ac3H11_4224 and Ac3H11_3935 are separated by 256 nucleotides Ac3H11_3935 and Ac3H11_3936 are separated by 68 nucleotides Ac3H11_3936 and Ac3H11_3937 overlap by 4 nucleotides Ac3H11_3937 and Ac3H11_3938 are separated by 68 nucleotides
Ac3H11_3934 - putative exported protein, at 149,614 to 153,870
_3934
Ac3H11_4224 - tRNA-Arg-CCT, at 153,925 to 153,996
_4224
Ac3H11_3935 - FIG006163: hypothetical protein, at 154,253 to 154,669
_3935
Ac3H11_3936 - PspA/IM30 family protein, at 154,738 to 155,481
_3936
Ac3H11_3937 - hypothetical protein, at 155,478 to 155,918
_3937
Ac3H11_3938 - hypothetical protein, at 155,987 to 156,631
_3938
Position (kb) 154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 153.739 kb on + strand at 153.740 kb on - strand at 153.740 kb on - strand at 153.740 kb on - strand at 153.740 kb on - strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.775 kb on + strand at 153.776 kb on - strand at 153.776 kb on - strand at 153.776 kb on - strand at 153.776 kb on - strand at 153.776 kb on - strand at 153.776 kb on - strand at 153.784 kb on + strand at 153.784 kb on + strand at 153.784 kb on + strand at 153.785 kb on - strand at 153.785 kb on - strand at 153.785 kb on - strand at 153.862 kb on + strand at 153.863 kb on - strand at 153.905 kb on + strand at 153.905 kb on + strand at 153.905 kb on + strand at 153.905 kb on + strand at 153.906 kb on - strand at 153.922 kb on + strand at 153.922 kb on + strand at 153.923 kb on - strand at 153.933 kb on - strand, within Ac3H11_4224 at 153.945 kb on - strand, within Ac3H11_4224 at 153.945 kb on - strand, within Ac3H11_4224 at 153.945 kb on - strand, within Ac3H11_4224 at 153.945 kb on - strand, within Ac3H11_4224 at 153.967 kb on + strand, within Ac3H11_4224 at 153.967 kb on + strand, within Ac3H11_4224 at 153.967 kb on + strand, within Ac3H11_4224 at 153.968 kb on - strand, within Ac3H11_4224 at 153.968 kb on - strand, within Ac3H11_4224 at 153.972 kb on - strand, within Ac3H11_4224 at 153.972 kb on - strand, within Ac3H11_4224 at 154.074 kb on + strand at 154.075 kb on - strand at 154.166 kb on - strand at 154.179 kb on + strand at 154.180 kb on - strand at 154.436 kb on + strand, within Ac3H11_3935 at 154.437 kb on - strand, within Ac3H11_3935 at 154.437 kb on - strand, within Ac3H11_3935 at 154.516 kb on - strand, within Ac3H11_3935 at 154.828 kb on + strand, within Ac3H11_3936 at 154.828 kb on + strand, within Ac3H11_3936 at 154.828 kb on + strand, within Ac3H11_3936 at 154.829 kb on - strand, within Ac3H11_3936 at 154.829 kb on - strand, within Ac3H11_3936 at 154.829 kb on - strand, within Ac3H11_3936 at 154.829 kb on - strand, within Ac3H11_3936 at 154.829 kb on - strand, within Ac3H11_3936 at 155.074 kb on + strand, within Ac3H11_3936 at 155.074 kb on + strand, within Ac3H11_3936 at 155.075 kb on - strand, within Ac3H11_3936 at 155.707 kb on - strand, within Ac3H11_3937 at 155.964 kb on + strand at 155.964 kb on + strand at 155.964 kb on + strand at 155.964 kb on + strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 155.965 kb on - strand at 156.035 kb on + strand at 156.035 kb on + strand at 156.035 kb on + strand at 156.036 kb on - strand at 156.065 kb on + strand, within Ac3H11_3938 at 156.065 kb on + strand, within Ac3H11_3938 at 156.065 kb on + strand, within Ac3H11_3938 at 156.066 kb on - strand, within Ac3H11_3938 at 156.176 kb on + strand, within Ac3H11_3938 at 156.176 kb on + strand, within Ac3H11_3938 at 156.177 kb on - strand, within Ac3H11_3938 at 156.177 kb on - strand, within Ac3H11_3938 at 156.177 kb on - strand, within Ac3H11_3938
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM remove 153,739 + -1.1 153,740 - -1.2 153,740 - +0.0 153,740 - +0.5 153,740 - +0.3 153,775 + -0.1 153,775 + +1.6 153,775 + +0.9 153,775 + -0.2 153,775 + -0.1 153,775 + +0.5 153,775 + -1.8 153,775 + -0.3 153,775 + -3.0 153,775 + +0.5 153,775 + -1.4 153,776 - -0.4 153,776 - -0.5 153,776 - -0.3 153,776 - -0.4 153,776 - -1.0 153,776 - +1.3 153,784 + -0.7 153,784 + -2.0 153,784 + +0.9 153,785 - +0.2 153,785 - -1.4 153,785 - -1.1 153,862 + +0.8 153,863 - -0.6 153,905 + -0.4 153,905 + +0.8 153,905 + -1.0 153,905 + +0.8 153,906 - +0.3 153,922 + -1.7 153,922 + -1.2 153,923 - -0.8 153,933 - Ac3H11_4224 0.11 -0.5 153,945 - Ac3H11_4224 0.28 -0.0 153,945 - Ac3H11_4224 0.28 +0.7 153,945 - Ac3H11_4224 0.28 +1.0 153,945 - Ac3H11_4224 0.28 -0.4 153,967 + Ac3H11_4224 0.58 +1.7 153,967 + Ac3H11_4224 0.58 +0.0 153,967 + Ac3H11_4224 0.58 +1.5 153,968 - Ac3H11_4224 0.60 -0.8 153,968 - Ac3H11_4224 0.60 -0.3 153,972 - Ac3H11_4224 0.65 -0.6 153,972 - Ac3H11_4224 0.65 -1.7 154,074 + -2.9 154,075 - -0.8 154,166 - -1.3 154,179 + -0.6 154,180 - -1.1 154,436 + Ac3H11_3935 0.44 -1.5 154,437 - Ac3H11_3935 0.44 -3.4 154,437 - Ac3H11_3935 0.44 -0.2 154,516 - Ac3H11_3935 0.63 +1.0 154,828 + Ac3H11_3936 0.12 -0.5 154,828 + Ac3H11_3936 0.12 +0.6 154,828 + Ac3H11_3936 0.12 -0.2 154,829 - Ac3H11_3936 0.12 +0.5 154,829 - Ac3H11_3936 0.12 +0.0 154,829 - Ac3H11_3936 0.12 +1.8 154,829 - Ac3H11_3936 0.12 -0.4 154,829 - Ac3H11_3936 0.12 -0.3 155,074 + Ac3H11_3936 0.45 -0.5 155,074 + Ac3H11_3936 0.45 -2.0 155,075 - Ac3H11_3936 0.45 -0.9 155,707 - Ac3H11_3937 0.52 +0.0 155,964 + -0.1 155,964 + -0.9 155,964 + -3.1 155,964 + -0.8 155,965 - +1.5 155,965 - -0.9 155,965 - +1.9 155,965 - -0.1 155,965 - +0.9 155,965 - -3.7 155,965 - -1.7 156,035 + +2.6 156,035 + -1.9 156,035 + +0.2 156,036 - -0.3 156,065 + Ac3H11_3938 0.12 -0.8 156,065 + Ac3H11_3938 0.12 +1.8 156,065 + Ac3H11_3938 0.12 -1.3 156,066 - Ac3H11_3938 0.12 -1.3 156,176 + Ac3H11_3938 0.29 -0.5 156,176 + Ac3H11_3938 0.29 +0.1 156,177 - Ac3H11_3938 0.29 -1.3 156,177 - Ac3H11_3938 0.29 -2.9 156,177 - Ac3H11_3938 0.29 -1.2
Or see this region's nucleotide sequence