Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3443

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3441 and Ac3H11_3442 are separated by 78 nucleotidesAc3H11_3442 and Ac3H11_3443 overlap by 4 nucleotidesAc3H11_3443 and Ac3H11_3444 are separated by 89 nucleotides Ac3H11_3441 - Enamidase (EC 3.5.2.18), at 124,129 to 125,316 _3441 Ac3H11_3442 - Outer membrane lipoprotein, at 125,395 to 126,198 _3442 Ac3H11_3443 - hypothetical protein, at 126,195 to 126,407 _3443 Ac3H11_3444 - Ribonuclease BN (EC 3.1.-.-), at 126,497 to 127,495 _3444 Position (kb) 126 127Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 125.315 kb on - strandat 125.399 kb on + strandat 125.399 kb on + strandat 125.399 kb on + strandat 125.399 kb on + strandat 125.399 kb on + strandat 125.400 kb on - strandat 125.400 kb on - strandat 125.441 kb on + strandat 125.582 kb on + strand, within Ac3H11_3442at 125.582 kb on + strand, within Ac3H11_3442at 125.582 kb on + strand, within Ac3H11_3442at 125.582 kb on + strand, within Ac3H11_3442at 125.583 kb on - strand, within Ac3H11_3442at 125.583 kb on - strand, within Ac3H11_3442at 125.627 kb on + strand, within Ac3H11_3442at 125.627 kb on + strand, within Ac3H11_3442at 125.627 kb on + strand, within Ac3H11_3442at 125.627 kb on + strand, within Ac3H11_3442at 125.627 kb on + strand, within Ac3H11_3442at 125.628 kb on - strand, within Ac3H11_3442at 125.628 kb on - strand, within Ac3H11_3442at 125.911 kb on - strand, within Ac3H11_3442at 125.933 kb on - strand, within Ac3H11_3442at 125.933 kb on - strand, within Ac3H11_3442at 125.933 kb on - strandat 126.145 kb on + strandat 126.186 kb on + strandat 126.186 kb on + strandat 126.186 kb on + strandat 126.186 kb on + strandat 126.187 kb on - strandat 126.187 kb on - strandat 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.228 kb on - strand, within Ac3H11_3443at 126.228 kb on - strand, within Ac3H11_3443at 126.228 kb on - strand, within Ac3H11_3443at 126.228 kb on - strand, within Ac3H11_3443at 126.295 kb on + strand, within Ac3H11_3443at 126.296 kb on - strand, within Ac3H11_3443at 126.296 kb on - strand, within Ac3H11_3443at 126.330 kb on + strand, within Ac3H11_3443at 126.341 kb on - strand, within Ac3H11_3443at 126.350 kb on + strand, within Ac3H11_3443at 126.351 kb on - strand, within Ac3H11_3443at 126.390 kb on + strandat 126.390 kb on + strandat 126.391 kb on - strandat 126.498 kb on + strandat 126.498 kb on + strandat 126.498 kb on + strandat 126.498 kb on + strandat 126.499 kb on - strandat 126.499 kb on - strandat 126.499 kb on - strandat 126.675 kb on + strand, within Ac3H11_3444at 126.675 kb on + strand, within Ac3H11_3444at 126.676 kb on - strand, within Ac3H11_3444at 126.676 kb on - strand, within Ac3H11_3444at 126.676 kb on - strand, within Ac3H11_3444at 126.706 kb on - strand, within Ac3H11_3444at 126.706 kb on - strand, within Ac3H11_3444at 126.706 kb on - strand, within Ac3H11_3444at 126.771 kb on + strand, within Ac3H11_3444at 126.999 kb on + strand, within Ac3H11_3444at 126.999 kb on + strand, within Ac3H11_3444at 126.999 kb on + strand, within Ac3H11_3444at 126.999 kb on + strand, within Ac3H11_3444at 126.999 kb on + strand, within Ac3H11_3444at 126.999 kb on + strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.063 kb on - strand, within Ac3H11_3444at 127.063 kb on - strand, within Ac3H11_3444at 127.063 kb on - strand, within Ac3H11_3444at 127.270 kb on - strand, within Ac3H11_3444at 127.270 kb on - strand, within Ac3H11_3444at 127.342 kb on - strand, within Ac3H11_3444

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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125,315 - +0.5
125,399 + +2.1
125,399 + +1.1
125,399 + +1.6
125,399 + +1.4
125,399 + -0.0
125,400 - +0.9
125,400 - -1.4
125,441 + +0.1
125,582 + Ac3H11_3442 0.23 +1.5
125,582 + Ac3H11_3442 0.23 +1.5
125,582 + Ac3H11_3442 0.23 -0.7
125,582 + Ac3H11_3442 0.23 +1.9
125,583 - Ac3H11_3442 0.23 -0.1
125,583 - Ac3H11_3442 0.23 -2.1
125,627 + Ac3H11_3442 0.29 -3.5
125,627 + Ac3H11_3442 0.29 +2.2
125,627 + Ac3H11_3442 0.29 +0.4
125,627 + Ac3H11_3442 0.29 +0.3
125,627 + Ac3H11_3442 0.29 -1.8
125,628 - Ac3H11_3442 0.29 -0.5
125,628 - Ac3H11_3442 0.29 -0.7
125,911 - Ac3H11_3442 0.64 -0.3
125,933 - Ac3H11_3442 0.67 -0.7
125,933 - Ac3H11_3442 0.67 -1.0
125,933 - +2.6
126,145 + -1.9
126,186 + -0.1
126,186 + +0.1
126,186 + -0.1
126,186 + +2.6
126,187 - +0.0
126,187 - +0.4
126,227 + Ac3H11_3443 0.15 +1.4
126,227 + Ac3H11_3443 0.15 +0.0
126,227 + Ac3H11_3443 0.15 -2.4
126,227 + Ac3H11_3443 0.15 +0.4
126,227 + Ac3H11_3443 0.15 -1.3
126,227 + Ac3H11_3443 0.15 -3.1
126,227 + Ac3H11_3443 0.15 +1.4
126,227 + Ac3H11_3443 0.15 -1.0
126,227 + Ac3H11_3443 0.15 -0.3
126,227 + Ac3H11_3443 0.15 -0.8
126,227 + Ac3H11_3443 0.15 -1.0
126,228 - Ac3H11_3443 0.15 +1.8
126,228 - Ac3H11_3443 0.15 +0.7
126,228 - Ac3H11_3443 0.15 +1.1
126,228 - Ac3H11_3443 0.15 +0.8
126,295 + Ac3H11_3443 0.47 -0.2
126,296 - Ac3H11_3443 0.47 +0.3
126,296 - Ac3H11_3443 0.47 +3.1
126,330 + Ac3H11_3443 0.63 -0.2
126,341 - Ac3H11_3443 0.69 +0.0
126,350 + Ac3H11_3443 0.73 +0.7
126,351 - Ac3H11_3443 0.73 +1.2
126,390 + -2.0
126,390 + -3.5
126,391 - +0.4
126,498 + -0.2
126,498 + -0.6
126,498 + +3.0
126,498 + -1.8
126,499 - -0.1
126,499 - -0.1
126,499 - +1.7
126,675 + Ac3H11_3444 0.18 +0.0
126,675 + Ac3H11_3444 0.18 -2.5
126,676 - Ac3H11_3444 0.18 -1.1
126,676 - Ac3H11_3444 0.18 -2.9
126,676 - Ac3H11_3444 0.18 +1.2
126,706 - Ac3H11_3444 0.21 -1.6
126,706 - Ac3H11_3444 0.21 +0.0
126,706 - Ac3H11_3444 0.21 +0.8
126,771 + Ac3H11_3444 0.27 -0.3
126,999 + Ac3H11_3444 0.50 -0.4
126,999 + Ac3H11_3444 0.50 -1.5
126,999 + Ac3H11_3444 0.50 -1.0
126,999 + Ac3H11_3444 0.50 -0.8
126,999 + Ac3H11_3444 0.50 -0.7
126,999 + Ac3H11_3444 0.50 -3.5
127,000 - Ac3H11_3444 0.50 +0.2
127,000 - Ac3H11_3444 0.50 -0.1
127,000 - Ac3H11_3444 0.50 +0.7
127,000 - Ac3H11_3444 0.50 +0.2
127,000 - Ac3H11_3444 0.50 +0.6
127,000 - Ac3H11_3444 0.50 -1.0
127,000 - Ac3H11_3444 0.50 +0.8
127,000 - Ac3H11_3444 0.50 -1.7
127,000 - Ac3H11_3444 0.50 -0.1
127,063 - Ac3H11_3444 0.57 -0.0
127,063 - Ac3H11_3444 0.57 -0.7
127,063 - Ac3H11_3444 0.57 -0.6
127,270 - Ac3H11_3444 0.77 -0.5
127,270 - Ac3H11_3444 0.77 -0.3
127,342 - Ac3H11_3444 0.85 +1.1

Or see this region's nucleotide sequence