Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_303

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_302 and Ac3H11_303 are separated by 77 nucleotidesAc3H11_303 and Ac3H11_304 are separated by 126 nucleotides Ac3H11_302 - Tyrosine recombinase XerD, at 123,703 to 124,602 _302 Ac3H11_303 - Tricarboxylate transport protein TctC, at 124,680 to 125,645 _303 Ac3H11_304 - putative membrane protein, at 125,772 to 126,677 _304 Position (kb) 124 125 126Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 123.764 kb on + strandat 123.764 kb on + strandat 123.764 kb on + strandat 123.764 kb on + strandat 123.765 kb on - strandat 123.765 kb on - strandat 123.765 kb on - strandat 123.765 kb on - strandat 123.765 kb on - strandat 124.023 kb on - strand, within Ac3H11_302at 124.023 kb on - strand, within Ac3H11_302at 124.421 kb on + strand, within Ac3H11_302at 124.613 kb on + strandat 124.613 kb on + strandat 124.682 kb on - strandat 124.682 kb on - strandat 124.720 kb on + strandat 124.720 kb on + strandat 124.720 kb on + strandat 124.720 kb on + strandat 124.720 kb on + strandat 124.721 kb on - strandat 124.721 kb on - strandat 124.721 kb on - strandat 124.897 kb on + strand, within Ac3H11_303at 124.897 kb on + strand, within Ac3H11_303at 124.898 kb on - strand, within Ac3H11_303at 124.898 kb on - strand, within Ac3H11_303at 124.898 kb on - strand, within Ac3H11_303at 124.898 kb on - strand, within Ac3H11_303at 124.900 kb on + strand, within Ac3H11_303at 124.900 kb on + strand, within Ac3H11_303at 124.901 kb on - strand, within Ac3H11_303at 124.901 kb on - strand, within Ac3H11_303at 124.901 kb on - strand, within Ac3H11_303at 124.901 kb on - strand, within Ac3H11_303at 125.140 kb on + strand, within Ac3H11_303at 125.140 kb on + strand, within Ac3H11_303at 125.140 kb on + strand, within Ac3H11_303at 125.140 kb on + strand, within Ac3H11_303at 125.140 kb on + strand, within Ac3H11_303at 125.140 kb on + strand, within Ac3H11_303at 125.141 kb on - strand, within Ac3H11_303at 125.141 kb on - strand, within Ac3H11_303at 125.141 kb on - strand, within Ac3H11_303at 125.141 kb on - strand, within Ac3H11_303at 125.141 kb on - strand, within Ac3H11_303at 125.141 kb on - strand, within Ac3H11_303at 125.141 kb on - strand, within Ac3H11_303at 125.188 kb on + strand, within Ac3H11_303at 125.188 kb on + strand, within Ac3H11_303at 125.189 kb on - strand, within Ac3H11_303at 125.189 kb on - strand, within Ac3H11_303at 125.194 kb on + strand, within Ac3H11_303at 125.194 kb on + strand, within Ac3H11_303at 125.194 kb on + strand, within Ac3H11_303at 125.194 kb on + strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.195 kb on - strand, within Ac3H11_303at 125.236 kb on + strand, within Ac3H11_303at 125.236 kb on + strand, within Ac3H11_303at 125.236 kb on + strand, within Ac3H11_303at 125.236 kb on + strand, within Ac3H11_303at 125.237 kb on + strand, within Ac3H11_303at 125.237 kb on - strand, within Ac3H11_303at 125.237 kb on - strand, within Ac3H11_303at 125.237 kb on - strand, within Ac3H11_303at 125.237 kb on - strand, within Ac3H11_303at 125.326 kb on + strand, within Ac3H11_303at 125.326 kb on + strand, within Ac3H11_303at 125.326 kb on + strand, within Ac3H11_303at 125.327 kb on - strand, within Ac3H11_303at 125.327 kb on - strand, within Ac3H11_303at 125.613 kb on + strandat 125.613 kb on + strandat 125.685 kb on + strandat 125.685 kb on + strandat 125.685 kb on + strandat 125.686 kb on - strandat 125.686 kb on - strandat 125.686 kb on - strandat 125.686 kb on - strandat 125.724 kb on + strandat 125.724 kb on + strandat 125.724 kb on + strandat 125.725 kb on - strandat 125.725 kb on - strandat 125.725 kb on - strandat 125.725 kb on - strandat 125.725 kb on - strandat 125.725 kb on - strandat 125.725 kb on - strandat 125.725 kb on - strandat 125.759 kb on + strandat 125.759 kb on + strandat 125.759 kb on + strandat 125.760 kb on - strandat 125.778 kb on + strandat 125.823 kb on + strandat 125.839 kb on - strandat 125.886 kb on + strand, within Ac3H11_304at 125.886 kb on + strand, within Ac3H11_304at 125.886 kb on + strand, within Ac3H11_304at 125.886 kb on + strand, within Ac3H11_304at 125.886 kb on + strand, within Ac3H11_304at 125.886 kb on + strand, within Ac3H11_304at 125.886 kb on + strand, within Ac3H11_304at 125.886 kb on + strand, within Ac3H11_304at 125.886 kb on + strand, within Ac3H11_304at 125.886 kb on + strand, within Ac3H11_304at 125.886 kb on + strand, within Ac3H11_304at 125.886 kb on + strand, within Ac3H11_304at 125.887 kb on - strand, within Ac3H11_304at 125.887 kb on - strand, within Ac3H11_304at 125.887 kb on - strand, within Ac3H11_304at 125.887 kb on - strand, within Ac3H11_304at 125.887 kb on - strand, within Ac3H11_304at 125.887 kb on - strand, within Ac3H11_304at 125.889 kb on + strand, within Ac3H11_304at 125.889 kb on + strand, within Ac3H11_304at 125.889 kb on + strand, within Ac3H11_304at 125.889 kb on + strand, within Ac3H11_304at 125.889 kb on + strand, within Ac3H11_304at 125.890 kb on - strand, within Ac3H11_304at 125.890 kb on - strand, within Ac3H11_304at 125.890 kb on - strand, within Ac3H11_304at 125.890 kb on - strand, within Ac3H11_304at 125.890 kb on - strand, within Ac3H11_304at 125.890 kb on - strand, within Ac3H11_304at 126.009 kb on + strand, within Ac3H11_304at 126.009 kb on + strand, within Ac3H11_304at 126.010 kb on - strand, within Ac3H11_304at 126.010 kb on - strand, within Ac3H11_304at 126.010 kb on - strand, within Ac3H11_304at 126.178 kb on + strand, within Ac3H11_304at 126.178 kb on + strand, within Ac3H11_304at 126.178 kb on + strand, within Ac3H11_304at 126.178 kb on + strand, within Ac3H11_304at 126.179 kb on - strand, within Ac3H11_304at 126.179 kb on - strand, within Ac3H11_304at 126.564 kb on + strand, within Ac3H11_304at 126.564 kb on + strand, within Ac3H11_304at 126.565 kb on - strand, within Ac3H11_304at 126.565 kb on - strand, within Ac3H11_304at 126.565 kb on - strand, within Ac3H11_304at 126.565 kb on - strand, within Ac3H11_304at 126.588 kb on + strandat 126.589 kb on - strandat 126.589 kb on - strandat 126.589 kb on - strandat 126.600 kb on + strandat 126.600 kb on + strandat 126.600 kb on + strandat 126.600 kb on + strandat 126.600 kb on + strandat 126.600 kb on + strandat 126.600 kb on + strandat 126.601 kb on - strandat 126.601 kb on - strandat 126.601 kb on - strandat 126.601 kb on - strandat 126.601 kb on - strandat 126.601 kb on - strandat 126.601 kb on - strandat 126.601 kb on - strandat 126.601 kb on - strandat 126.601 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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123,764 + -1.4
123,764 + -0.2
123,764 + -1.9
123,764 + -0.4
123,765 - +1.1
123,765 - +2.8
123,765 - -2.1
123,765 - -0.8
123,765 - -0.0
124,023 - Ac3H11_302 0.36 -0.4
124,023 - Ac3H11_302 0.36 -0.8
124,421 + Ac3H11_302 0.80 +2.2
124,613 + +0.4
124,613 + +0.3
124,682 - +0.8
124,682 - +0.0
124,720 + -2.2
124,720 + +1.3
124,720 + -1.2
124,720 + +1.2
124,720 + -1.5
124,721 - +0.2
124,721 - +1.7
124,721 - -0.1
124,897 + Ac3H11_303 0.22 -1.5
124,897 + Ac3H11_303 0.22 -0.3
124,898 - Ac3H11_303 0.23 -1.4
124,898 - Ac3H11_303 0.23 +3.3
124,898 - Ac3H11_303 0.23 -0.3
124,898 - Ac3H11_303 0.23 -2.2
124,900 + Ac3H11_303 0.23 +1.2
124,900 + Ac3H11_303 0.23 -2.9
124,901 - Ac3H11_303 0.23 -3.0
124,901 - Ac3H11_303 0.23 -1.1
124,901 - Ac3H11_303 0.23 +0.8
124,901 - Ac3H11_303 0.23 -0.4
125,140 + Ac3H11_303 0.48 +1.1
125,140 + Ac3H11_303 0.48 +0.6
125,140 + Ac3H11_303 0.48 -0.3
125,140 + Ac3H11_303 0.48 -1.4
125,140 + Ac3H11_303 0.48 +0.2
125,140 + Ac3H11_303 0.48 -1.4
125,141 - Ac3H11_303 0.48 -1.8
125,141 - Ac3H11_303 0.48 -4.2
125,141 - Ac3H11_303 0.48 +0.7
125,141 - Ac3H11_303 0.48 +2.4
125,141 - Ac3H11_303 0.48 -1.0
125,141 - Ac3H11_303 0.48 +0.1
125,141 - Ac3H11_303 0.48 +1.7
125,188 + Ac3H11_303 0.53 +0.1
125,188 + Ac3H11_303 0.53 -0.6
125,189 - Ac3H11_303 0.53 +0.7
125,189 - Ac3H11_303 0.53 +2.6
125,194 + Ac3H11_303 0.53 +0.4
125,194 + Ac3H11_303 0.53 -1.4
125,194 + Ac3H11_303 0.53 +1.3
125,194 + Ac3H11_303 0.53 -0.0
125,195 - Ac3H11_303 0.53 -0.5
125,195 - Ac3H11_303 0.53 -1.4
125,195 - Ac3H11_303 0.53 +0.3
125,195 - Ac3H11_303 0.53 +1.8
125,195 - Ac3H11_303 0.53 -0.7
125,195 - Ac3H11_303 0.53 -0.9
125,195 - Ac3H11_303 0.53 -1.4
125,195 - Ac3H11_303 0.53 +1.5
125,195 - Ac3H11_303 0.53 -1.8
125,195 - Ac3H11_303 0.53 -1.2
125,236 + Ac3H11_303 0.58 -0.1
125,236 + Ac3H11_303 0.58 -0.2
125,236 + Ac3H11_303 0.58 -0.4
125,236 + Ac3H11_303 0.58 -1.4
125,237 + Ac3H11_303 0.58 +1.0
125,237 - Ac3H11_303 0.58 +0.5
125,237 - Ac3H11_303 0.58 -1.0
125,237 - Ac3H11_303 0.58 -0.1
125,237 - Ac3H11_303 0.58 +0.1
125,326 + Ac3H11_303 0.67 +0.1
125,326 + Ac3H11_303 0.67 +1.8
125,326 + Ac3H11_303 0.67 +0.5
125,327 - Ac3H11_303 0.67 +0.1
125,327 - Ac3H11_303 0.67 +1.6
125,613 + +0.3
125,613 + -0.7
125,685 + -0.4
125,685 + -0.9
125,685 + +0.0
125,686 - +0.4
125,686 - +0.3
125,686 - -1.0
125,686 - -0.2
125,724 + -1.8
125,724 + -1.2
125,724 + +0.2
125,725 - -1.4
125,725 - -2.4
125,725 - +0.9
125,725 - +0.6
125,725 - +5.2
125,725 - +1.6
125,725 - +0.0
125,725 - -0.6
125,759 + -0.2
125,759 + +1.3
125,759 + +0.2
125,760 - +0.7
125,778 + -1.4
125,823 + -1.0
125,839 - -1.8
125,886 + Ac3H11_304 0.13 -2.4
125,886 + Ac3H11_304 0.13 -0.9
125,886 + Ac3H11_304 0.13 +1.9
125,886 + Ac3H11_304 0.13 -2.8
125,886 + Ac3H11_304 0.13 -0.2
125,886 + Ac3H11_304 0.13 +1.7
125,886 + Ac3H11_304 0.13 +0.6
125,886 + Ac3H11_304 0.13 +0.3
125,886 + Ac3H11_304 0.13 +0.1
125,886 + Ac3H11_304 0.13 -1.1
125,886 + Ac3H11_304 0.13 -1.3
125,886 + Ac3H11_304 0.13 -1.3
125,887 - Ac3H11_304 0.13 +0.6
125,887 - Ac3H11_304 0.13 -0.0
125,887 - Ac3H11_304 0.13 -1.3
125,887 - Ac3H11_304 0.13 +0.3
125,887 - Ac3H11_304 0.13 +0.7
125,887 - Ac3H11_304 0.13 -0.9
125,889 + Ac3H11_304 0.13 -1.2
125,889 + Ac3H11_304 0.13 -0.4
125,889 + Ac3H11_304 0.13 +0.6
125,889 + Ac3H11_304 0.13 -2.6
125,889 + Ac3H11_304 0.13 -1.3
125,890 - Ac3H11_304 0.13 -0.1
125,890 - Ac3H11_304 0.13 +0.8
125,890 - Ac3H11_304 0.13 -1.0
125,890 - Ac3H11_304 0.13 -0.0
125,890 - Ac3H11_304 0.13 -2.7
125,890 - Ac3H11_304 0.13 -0.4
126,009 + Ac3H11_304 0.26 -0.1
126,009 + Ac3H11_304 0.26 +1.2
126,010 - Ac3H11_304 0.26 -1.4
126,010 - Ac3H11_304 0.26 +0.8
126,010 - Ac3H11_304 0.26 +1.8
126,178 + Ac3H11_304 0.45 -2.1
126,178 + Ac3H11_304 0.45 +0.5
126,178 + Ac3H11_304 0.45 +0.7
126,178 + Ac3H11_304 0.45 +1.2
126,179 - Ac3H11_304 0.45 -0.9
126,179 - Ac3H11_304 0.45 +0.3
126,564 + Ac3H11_304 0.87 -0.8
126,564 + Ac3H11_304 0.87 +0.4
126,565 - Ac3H11_304 0.88 +1.7
126,565 - Ac3H11_304 0.88 +0.8
126,565 - Ac3H11_304 0.88 +0.7
126,565 - Ac3H11_304 0.88 -0.3
126,588 + +0.1
126,589 - -1.7
126,589 - +1.4
126,589 - +0.5
126,600 + +4.5
126,600 + +1.6
126,600 + -1.4
126,600 + +0.0
126,600 + +2.6
126,600 + -1.9
126,600 + -0.3
126,601 - -1.4
126,601 - +0.1
126,601 - +0.1
126,601 - +1.2
126,601 - +0.7
126,601 - +2.3
126,601 - -0.5
126,601 - +2.1
126,601 - -0.2
126,601 - -1.4

Or see this region's nucleotide sequence