Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2875

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2872 and Ac3H11_2873 are separated by 12 nucleotidesAc3H11_2873 and Ac3H11_2874 overlap by 21 nucleotidesAc3H11_2874 and Ac3H11_2875 overlap by 4 nucleotidesAc3H11_2875 and Ac3H11_2876 are separated by 295 nucleotidesAc3H11_2876 and Ac3H11_2877 are separated by 22 nucleotides Ac3H11_2872 - Putative diheme cytochrome c-553, at 1,181,814 to 1,183,094 _2872 Ac3H11_2873 - Probable cytochrome c2, at 1,183,107 to 1,183,889 _2873 Ac3H11_2874 - hypothetical protein, at 1,183,869 to 1,184,009 _2874 Ac3H11_2875 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 1,184,006 to 1,185,454 _2875 Ac3H11_2876 - hypothetical protein, at 1,185,750 to 1,186,106 _2876 Ac3H11_2877 - Nucleoside-diphosphate-sugar epimerases, at 1,186,129 to 1,187,295 _2877 Position (kb) 1184 1185 1186Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1183.549 kb on + strand, within Ac3H11_2873at 1183.576 kb on + strand, within Ac3H11_2873at 1183.576 kb on + strand, within Ac3H11_2873at 1183.576 kb on + strand, within Ac3H11_2873at 1183.576 kb on + strand, within Ac3H11_2873at 1183.576 kb on + strand, within Ac3H11_2873at 1183.577 kb on - strand, within Ac3H11_2873at 1183.577 kb on - strand, within Ac3H11_2873at 1183.577 kb on - strand, within Ac3H11_2873at 1183.592 kb on - strand, within Ac3H11_2873at 1183.637 kb on - strand, within Ac3H11_2873at 1183.669 kb on + strand, within Ac3H11_2873at 1183.669 kb on + strand, within Ac3H11_2873at 1183.670 kb on - strand, within Ac3H11_2873at 1183.912 kb on - strand, within Ac3H11_2874at 1183.912 kb on - strand, within Ac3H11_2874at 1183.912 kb on - strand, within Ac3H11_2874at 1183.933 kb on - strand, within Ac3H11_2874at 1183.951 kb on + strand, within Ac3H11_2874at 1183.999 kb on + strandat 1184.128 kb on + strandat 1184.129 kb on - strandat 1184.144 kb on + strandat 1184.144 kb on + strandat 1184.144 kb on + strandat 1184.144 kb on + strandat 1184.145 kb on - strandat 1184.147 kb on + strandat 1184.148 kb on - strandat 1184.148 kb on - strandat 1184.195 kb on + strand, within Ac3H11_2875at 1184.195 kb on + strand, within Ac3H11_2875at 1184.196 kb on - strand, within Ac3H11_2875at 1184.199 kb on - strand, within Ac3H11_2875at 1184.199 kb on - strand, within Ac3H11_2875at 1184.199 kb on - strand, within Ac3H11_2875at 1184.199 kb on - strand, within Ac3H11_2875at 1184.199 kb on - strand, within Ac3H11_2875at 1184.627 kb on + strand, within Ac3H11_2875at 1184.628 kb on - strand, within Ac3H11_2875at 1184.879 kb on + strand, within Ac3H11_2875at 1184.879 kb on + strand, within Ac3H11_2875at 1184.879 kb on + strand, within Ac3H11_2875at 1184.879 kb on + strand, within Ac3H11_2875at 1184.987 kb on + strand, within Ac3H11_2875at 1185.113 kb on + strand, within Ac3H11_2875at 1185.369 kb on - strandat 1185.369 kb on - strandat 1185.471 kb on - strandat 1185.487 kb on + strandat 1185.492 kb on - strandat 1185.672 kb on - strandat 1185.672 kb on - strandat 1185.901 kb on + strand, within Ac3H11_2876at 1185.902 kb on - strand, within Ac3H11_2876at 1186.185 kb on + strandat 1186.186 kb on - strandat 1186.223 kb on + strandat 1186.292 kb on + strand, within Ac3H11_2877at 1186.293 kb on - strand, within Ac3H11_2877

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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1,183,549 + Ac3H11_2873 0.56 -0.5
1,183,576 + Ac3H11_2873 0.60 -0.5
1,183,576 + Ac3H11_2873 0.60 +1.0
1,183,576 + Ac3H11_2873 0.60 +2.5
1,183,576 + Ac3H11_2873 0.60 -0.4
1,183,576 + Ac3H11_2873 0.60 -1.3
1,183,577 - Ac3H11_2873 0.60 +0.1
1,183,577 - Ac3H11_2873 0.60 +1.4
1,183,577 - Ac3H11_2873 0.60 +0.3
1,183,592 - Ac3H11_2873 0.62 -2.0
1,183,637 - Ac3H11_2873 0.68 +0.5
1,183,669 + Ac3H11_2873 0.72 -0.4
1,183,669 + Ac3H11_2873 0.72 -2.5
1,183,670 - Ac3H11_2873 0.72 -1.6
1,183,912 - Ac3H11_2874 0.30 -3.0
1,183,912 - Ac3H11_2874 0.30 -3.0
1,183,912 - Ac3H11_2874 0.30 -0.3
1,183,933 - Ac3H11_2874 0.45 -2.3
1,183,951 + Ac3H11_2874 0.58 +0.6
1,183,999 + -1.0
1,184,128 + -0.5
1,184,129 - +1.0
1,184,144 + +2.9
1,184,144 + +2.0
1,184,144 + -1.1
1,184,144 + -0.2
1,184,145 - -2.0
1,184,147 + -0.6
1,184,148 - -0.4
1,184,148 - +0.1
1,184,195 + Ac3H11_2875 0.13 -2.8
1,184,195 + Ac3H11_2875 0.13 +2.2
1,184,196 - Ac3H11_2875 0.13 -0.2
1,184,199 - Ac3H11_2875 0.13 +0.6
1,184,199 - Ac3H11_2875 0.13 -1.2
1,184,199 - Ac3H11_2875 0.13 -2.3
1,184,199 - Ac3H11_2875 0.13 -0.7
1,184,199 - Ac3H11_2875 0.13 -0.4
1,184,627 + Ac3H11_2875 0.43 +0.4
1,184,628 - Ac3H11_2875 0.43 +0.7
1,184,879 + Ac3H11_2875 0.60 +0.7
1,184,879 + Ac3H11_2875 0.60 -1.5
1,184,879 + Ac3H11_2875 0.60 -0.1
1,184,879 + Ac3H11_2875 0.60 +0.4
1,184,987 + Ac3H11_2875 0.68 -1.6
1,185,113 + Ac3H11_2875 0.76 +0.5
1,185,369 - -2.7
1,185,369 - +0.1
1,185,471 - +1.1
1,185,487 + -2.8
1,185,492 - +0.1
1,185,672 - +0.3
1,185,672 - +0.7
1,185,901 + Ac3H11_2876 0.42 +0.1
1,185,902 - Ac3H11_2876 0.43 -0.2
1,186,185 + -0.2
1,186,186 - -0.4
1,186,223 + +0.6
1,186,292 + Ac3H11_2877 0.14 -0.4
1,186,293 - Ac3H11_2877 0.14 -0.5

Or see this region's nucleotide sequence