Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_269

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_266 and Ac3H11_267 are separated by 6 nucleotidesAc3H11_267 and Ac3H11_268 overlap by 4 nucleotidesAc3H11_268 and Ac3H11_269 are separated by 229 nucleotidesAc3H11_269 and Ac3H11_270 are separated by 54 nucleotidesAc3H11_270 and Ac3H11_271 overlap by 32 nucleotides Ac3H11_266 - DNA internalization-related competence protein ComEC/Rec2, at 88,678 to 91,248 _266 Ac3H11_267 - hypothetical protein, at 91,255 to 91,404 _267 Ac3H11_268 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 91,401 to 91,859 _268 Ac3H11_269 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 92,089 to 93,855 _269 Ac3H11_270 - hypothetical protein, at 93,910 to 94,155 _270 Ac3H11_271 - Topoisomerase IV subunit A (EC 5.99.1.-), at 94,124 to 96,481 _271 Position (kb) 92 93 94Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 91.228 kb on - strandat 91.238 kb on - strandat 91.238 kb on - strandat 91.259 kb on + strandat 91.259 kb on + strandat 91.259 kb on + strandat 91.259 kb on + strandat 91.259 kb on + strandat 91.259 kb on + strandat 91.260 kb on - strandat 91.308 kb on + strand, within Ac3H11_267at 91.308 kb on + strand, within Ac3H11_267at 91.309 kb on - strand, within Ac3H11_267at 91.309 kb on - strand, within Ac3H11_267at 91.309 kb on - strand, within Ac3H11_267at 91.309 kb on - strand, within Ac3H11_267at 91.309 kb on - strand, within Ac3H11_267at 91.411 kb on - strandat 91.411 kb on - strandat 91.471 kb on - strand, within Ac3H11_268at 91.479 kb on + strand, within Ac3H11_268at 91.480 kb on - strand, within Ac3H11_268at 91.480 kb on - strand, within Ac3H11_268at 91.480 kb on - strand, within Ac3H11_268at 91.480 kb on - strand, within Ac3H11_268at 91.480 kb on - strand, within Ac3H11_268at 91.480 kb on - strand, within Ac3H11_268at 92.090 kb on + strandat 92.090 kb on + strandat 92.090 kb on + strandat 92.306 kb on + strand, within Ac3H11_269at 92.306 kb on + strand, within Ac3H11_269at 92.306 kb on + strand, within Ac3H11_269at 92.306 kb on + strand, within Ac3H11_269at 92.306 kb on + strand, within Ac3H11_269at 92.307 kb on - strand, within Ac3H11_269at 92.307 kb on - strand, within Ac3H11_269at 93.101 kb on + strand, within Ac3H11_269at 93.101 kb on + strand, within Ac3H11_269at 93.101 kb on + strand, within Ac3H11_269at 93.101 kb on + strand, within Ac3H11_269at 93.102 kb on - strand, within Ac3H11_269at 93.102 kb on - strand, within Ac3H11_269at 93.233 kb on + strand, within Ac3H11_269at 93.233 kb on + strand, within Ac3H11_269at 93.233 kb on + strand, within Ac3H11_269at 93.234 kb on - strand, within Ac3H11_269at 93.234 kb on - strand, within Ac3H11_269at 93.234 kb on - strand, within Ac3H11_269at 93.234 kb on - strandat 93.234 kb on - strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.383 kb on + strand, within Ac3H11_269at 93.383 kb on + strand, within Ac3H11_269at 93.383 kb on + strand, within Ac3H11_269at 93.383 kb on + strand, within Ac3H11_269at 93.383 kb on + strand, within Ac3H11_269at 93.383 kb on + strand, within Ac3H11_269at 93.383 kb on + strand, within Ac3H11_269at 93.383 kb on + strand, within Ac3H11_269at 93.384 kb on - strand, within Ac3H11_269at 93.384 kb on - strand, within Ac3H11_269at 93.384 kb on - strand, within Ac3H11_269at 93.384 kb on - strand, within Ac3H11_269at 93.384 kb on - strand, within Ac3H11_269at 93.384 kb on - strand, within Ac3H11_269at 93.384 kb on - strand, within Ac3H11_269at 93.404 kb on + strand, within Ac3H11_269at 93.404 kb on + strand, within Ac3H11_269at 93.404 kb on + strand, within Ac3H11_269at 93.404 kb on + strand, within Ac3H11_269at 93.404 kb on + strand, within Ac3H11_269at 93.404 kb on + strand, within Ac3H11_269at 93.404 kb on + strand, within Ac3H11_269at 93.404 kb on + strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.804 kb on + strandat 93.805 kb on - strandat 93.805 kb on - strandat 93.805 kb on - strandat 94.014 kb on + strand, within Ac3H11_270at 94.014 kb on + strand, within Ac3H11_270at 94.014 kb on + strand, within Ac3H11_270at 94.015 kb on - strand, within Ac3H11_270at 94.015 kb on - strand, within Ac3H11_270at 94.015 kb on - strand, within Ac3H11_270at 94.015 kb on - strand, within Ac3H11_270at 94.018 kb on + strand, within Ac3H11_270at 94.018 kb on + strand, within Ac3H11_270at 94.018 kb on + strand, within Ac3H11_270at 94.018 kb on + strand, within Ac3H11_270at 94.018 kb on + strand, within Ac3H11_270at 94.018 kb on + strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.126 kb on - strandat 94.126 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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91,228 - +0.1
91,238 - -1.1
91,238 - +0.7
91,259 + -0.0
91,259 + -0.1
91,259 + +0.8
91,259 + +1.2
91,259 + -0.1
91,259 + -0.4
91,260 - -1.6
91,308 + Ac3H11_267 0.35 -3.6
91,308 + Ac3H11_267 0.35 -0.1
91,309 - Ac3H11_267 0.36 +1.6
91,309 - Ac3H11_267 0.36 -0.0
91,309 - Ac3H11_267 0.36 -1.0
91,309 - Ac3H11_267 0.36 +0.1
91,309 - Ac3H11_267 0.36 +1.0
91,411 - -1.0
91,411 - -0.4
91,471 - Ac3H11_268 0.15 -1.8
91,479 + Ac3H11_268 0.17 -1.4
91,480 - Ac3H11_268 0.17 -0.0
91,480 - Ac3H11_268 0.17 -1.4
91,480 - Ac3H11_268 0.17 -1.8
91,480 - Ac3H11_268 0.17 -0.2
91,480 - Ac3H11_268 0.17 -1.8
91,480 - Ac3H11_268 0.17 -3.2
92,090 + +0.2
92,090 + +0.6
92,090 + +0.9
92,306 + Ac3H11_269 0.12 -0.6
92,306 + Ac3H11_269 0.12 -0.7
92,306 + Ac3H11_269 0.12 -1.5
92,306 + Ac3H11_269 0.12 +3.1
92,306 + Ac3H11_269 0.12 +0.2
92,307 - Ac3H11_269 0.12 -1.3
92,307 - Ac3H11_269 0.12 +1.0
93,101 + Ac3H11_269 0.57 -1.0
93,101 + Ac3H11_269 0.57 -1.2
93,101 + Ac3H11_269 0.57 -0.0
93,101 + Ac3H11_269 0.57 -3.7
93,102 - Ac3H11_269 0.57 -0.6
93,102 - Ac3H11_269 0.57 +3.8
93,233 + Ac3H11_269 0.65 -0.0
93,233 + Ac3H11_269 0.65 -0.8
93,233 + Ac3H11_269 0.65 +1.6
93,234 - Ac3H11_269 0.65 -1.0
93,234 - Ac3H11_269 0.65 -1.8
93,234 - Ac3H11_269 0.65 +0.7
93,234 - +1.6
93,234 - Ac3H11_269 0.65 -0.1
93,236 + Ac3H11_269 0.65 -0.4
93,236 + Ac3H11_269 0.65 -2.4
93,236 + Ac3H11_269 0.65 -1.3
93,236 + Ac3H11_269 0.65 +0.4
93,236 + Ac3H11_269 0.65 +0.2
93,236 + Ac3H11_269 0.65 +0.1
93,236 + Ac3H11_269 0.65 -0.2
93,236 + Ac3H11_269 0.65 -0.5
93,236 + Ac3H11_269 0.65 -1.4
93,236 + Ac3H11_269 0.65 -1.0
93,237 - Ac3H11_269 0.65 +0.8
93,237 - Ac3H11_269 0.65 -2.0
93,237 - Ac3H11_269 0.65 +0.2
93,237 - Ac3H11_269 0.65 -1.1
93,237 - Ac3H11_269 0.65 +1.2
93,237 - Ac3H11_269 0.65 +1.7
93,237 - Ac3H11_269 0.65 -1.0
93,237 - Ac3H11_269 0.65 -0.4
93,237 - Ac3H11_269 0.65 +0.6
93,237 - Ac3H11_269 0.65 +1.7
93,383 + Ac3H11_269 0.73 -2.1
93,383 + Ac3H11_269 0.73 +0.3
93,383 + Ac3H11_269 0.73 -2.7
93,383 + Ac3H11_269 0.73 +0.8
93,383 + Ac3H11_269 0.73 -2.4
93,383 + Ac3H11_269 0.73 +1.2
93,383 + Ac3H11_269 0.73 -1.9
93,383 + Ac3H11_269 0.73 +0.5
93,384 - Ac3H11_269 0.73 +1.1
93,384 - Ac3H11_269 0.73 +2.9
93,384 - Ac3H11_269 0.73 +2.1
93,384 - Ac3H11_269 0.73 +0.5
93,384 - Ac3H11_269 0.73 -0.1
93,384 - Ac3H11_269 0.73 +2.6
93,384 - Ac3H11_269 0.73 +0.9
93,404 + Ac3H11_269 0.74 +0.2
93,404 + Ac3H11_269 0.74 +0.8
93,404 + Ac3H11_269 0.74 +0.5
93,404 + Ac3H11_269 0.74 -1.1
93,404 + Ac3H11_269 0.74 -2.2
93,404 + Ac3H11_269 0.74 +1.5
93,404 + Ac3H11_269 0.74 -2.2
93,404 + Ac3H11_269 0.74 +2.1
93,405 - Ac3H11_269 0.74 +0.7
93,405 - Ac3H11_269 0.74 +0.8
93,405 - Ac3H11_269 0.74 +1.2
93,405 - Ac3H11_269 0.74 -0.2
93,405 - Ac3H11_269 0.74 -0.1
93,405 - Ac3H11_269 0.74 +1.6
93,405 - Ac3H11_269 0.74 +1.2
93,405 - Ac3H11_269 0.74 +1.2
93,405 - Ac3H11_269 0.74 -0.8
93,405 - Ac3H11_269 0.74 +0.1
93,405 - Ac3H11_269 0.74 +0.5
93,405 - Ac3H11_269 0.74 -0.5
93,405 - Ac3H11_269 0.74 -0.1
93,405 - Ac3H11_269 0.74 -1.1
93,405 - Ac3H11_269 0.74 -2.6
93,804 + +3.6
93,805 - +1.4
93,805 - +0.6
93,805 - -2.3
94,014 + Ac3H11_270 0.42 -2.9
94,014 + Ac3H11_270 0.42 +1.7
94,014 + Ac3H11_270 0.42 -0.0
94,015 - Ac3H11_270 0.43 +0.6
94,015 - Ac3H11_270 0.43 +0.6
94,015 - Ac3H11_270 0.43 -2.0
94,015 - Ac3H11_270 0.43 -2.7
94,018 + Ac3H11_270 0.44 +1.6
94,018 + Ac3H11_270 0.44 +0.6
94,018 + Ac3H11_270 0.44 -2.0
94,018 + Ac3H11_270 0.44 +1.1
94,018 + Ac3H11_270 0.44 +1.4
94,018 + Ac3H11_270 0.44 +0.3
94,019 - Ac3H11_270 0.44 +0.9
94,019 - Ac3H11_270 0.44 +1.6
94,019 - Ac3H11_270 0.44 +0.2
94,019 - Ac3H11_270 0.44 +1.6
94,019 - Ac3H11_270 0.44 -0.2
94,019 - Ac3H11_270 0.44 -2.0
94,019 - Ac3H11_270 0.44 +0.9
94,019 - Ac3H11_270 0.44 +1.3
94,019 - Ac3H11_270 0.44 +0.7
94,019 - Ac3H11_270 0.44 -2.1
94,126 - +0.2
94,126 - +1.1

Or see this region's nucleotide sequence