Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2563

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2562 and Ac3H11_2563 are separated by 370 nucleotidesAc3H11_2563 and Ac3H11_2564 overlap by 4 nucleotidesAc3H11_2564 and Ac3H11_2565 are separated by 17 nucleotides Ac3H11_2562 - ABC transporter for L-Histidine, periplasmic substrate-binding component 2 (from data), at 839,972 to 840,937 _2562 Ac3H11_2563 - Adenylate cyclase (EC 4.6.1.1), at 841,308 to 842,699 _2563 Ac3H11_2564 - Response regulator receiver:Transcriptional regulatory protein, C terminal, at 842,696 to 843,382 _2564 Ac3H11_2565 - hypothetical protein, at 843,400 to 843,735 _2565 Position (kb) 841 842 843Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 840.318 kb on + strand, within Ac3H11_2562at 840.319 kb on - strand, within Ac3H11_2562at 840.378 kb on + strand, within Ac3H11_2562at 840.379 kb on - strand, within Ac3H11_2562at 840.379 kb on - strand, within Ac3H11_2562at 840.387 kb on + strand, within Ac3H11_2562at 840.387 kb on + strand, within Ac3H11_2562at 840.387 kb on + strand, within Ac3H11_2562at 840.387 kb on + strand, within Ac3H11_2562at 840.388 kb on - strand, within Ac3H11_2562at 840.388 kb on - strand, within Ac3H11_2562at 840.388 kb on - strand, within Ac3H11_2562at 840.388 kb on - strand, within Ac3H11_2562at 840.388 kb on - strand, within Ac3H11_2562at 840.388 kb on - strand, within Ac3H11_2562at 840.388 kb on - strand, within Ac3H11_2562at 840.513 kb on + strand, within Ac3H11_2562at 840.513 kb on + strand, within Ac3H11_2562at 840.513 kb on + strand, within Ac3H11_2562at 840.513 kb on + strand, within Ac3H11_2562at 840.514 kb on - strand, within Ac3H11_2562at 840.610 kb on - strand, within Ac3H11_2562at 840.961 kb on + strandat 841.017 kb on + strandat 841.023 kb on + strandat 841.023 kb on + strandat 841.023 kb on + strandat 841.023 kb on + strandat 841.023 kb on + strandat 841.024 kb on - strandat 841.024 kb on - strandat 841.024 kb on - strandat 841.024 kb on - strandat 841.024 kb on - strandat 841.024 kb on - strandat 841.024 kb on - strandat 841.024 kb on - strandat 841.024 kb on - strandat 841.024 kb on - strandat 841.025 kb on + strandat 841.025 kb on + strandat 841.025 kb on + strandat 841.025 kb on + strandat 841.025 kb on + strandat 841.025 kb on + strandat 841.025 kb on + strandat 841.025 kb on + strandat 841.026 kb on - strandat 841.026 kb on - strandat 841.026 kb on - strandat 841.027 kb on + strandat 841.027 kb on + strandat 841.027 kb on + strandat 841.027 kb on + strandat 841.027 kb on + strandat 841.028 kb on - strandat 841.034 kb on + strandat 841.034 kb on + strandat 841.074 kb on + strandat 841.074 kb on + strandat 841.075 kb on - strandat 841.075 kb on - strandat 841.127 kb on + strandat 841.127 kb on + strandat 841.127 kb on + strandat 841.127 kb on + strandat 841.128 kb on - strandat 841.210 kb on - strandat 841.287 kb on - strandat 841.408 kb on + strandat 841.409 kb on - strandat 841.409 kb on - strandat 841.462 kb on + strand, within Ac3H11_2563at 842.009 kb on + strand, within Ac3H11_2563at 842.009 kb on + strand, within Ac3H11_2563at 842.010 kb on - strand, within Ac3H11_2563at 842.149 kb on + strand, within Ac3H11_2563at 842.149 kb on + strand, within Ac3H11_2563at 842.149 kb on + strand, within Ac3H11_2563at 842.149 kb on + strand, within Ac3H11_2563at 842.149 kb on + strand, within Ac3H11_2563at 842.149 kb on + strand, within Ac3H11_2563at 842.149 kb on + strand, within Ac3H11_2563at 842.149 kb on + strand, within Ac3H11_2563at 842.149 kb on + strand, within Ac3H11_2563at 842.149 kb on + strand, within Ac3H11_2563at 842.149 kb on + strand, within Ac3H11_2563at 842.150 kb on - strand, within Ac3H11_2563at 842.150 kb on - strand, within Ac3H11_2563at 842.150 kb on - strand, within Ac3H11_2563at 842.150 kb on - strand, within Ac3H11_2563at 842.150 kb on - strand, within Ac3H11_2563at 842.150 kb on - strand, within Ac3H11_2563at 842.150 kb on - strand, within Ac3H11_2563at 842.150 kb on - strand, within Ac3H11_2563at 842.150 kb on - strand, within Ac3H11_2563at 842.150 kb on - strand, within Ac3H11_2563at 842.150 kb on - strand, within Ac3H11_2563at 842.150 kb on - strand, within Ac3H11_2563at 842.155 kb on + strand, within Ac3H11_2563at 842.155 kb on + strand, within Ac3H11_2563at 842.155 kb on + strand, within Ac3H11_2563at 842.155 kb on + strand, within Ac3H11_2563at 842.156 kb on - strand, within Ac3H11_2563at 842.156 kb on - strand, within Ac3H11_2563at 842.176 kb on - strand, within Ac3H11_2563at 842.485 kb on + strand, within Ac3H11_2563at 842.485 kb on + strand, within Ac3H11_2563at 842.485 kb on + strand, within Ac3H11_2563at 842.485 kb on + strand, within Ac3H11_2563at 842.485 kb on + strand, within Ac3H11_2563at 842.485 kb on + strand, within Ac3H11_2563at 842.485 kb on + strand, within Ac3H11_2563at 842.486 kb on - strand, within Ac3H11_2563at 842.486 kb on - strand, within Ac3H11_2563at 842.486 kb on - strand, within Ac3H11_2563at 842.486 kb on - strand, within Ac3H11_2563at 842.486 kb on - strand, within Ac3H11_2563at 842.486 kb on - strand, within Ac3H11_2563at 842.486 kb on - strand, within Ac3H11_2563at 842.486 kb on - strand, within Ac3H11_2563at 842.486 kb on - strand, within Ac3H11_2563at 842.486 kb on - strand, within Ac3H11_2563at 842.727 kb on + strandat 842.814 kb on + strand, within Ac3H11_2564at 842.814 kb on + strand, within Ac3H11_2564at 842.814 kb on + strand, within Ac3H11_2564at 842.814 kb on + strand, within Ac3H11_2564at 842.814 kb on + strand, within Ac3H11_2564at 842.815 kb on - strand, within Ac3H11_2564at 842.815 kb on - strand, within Ac3H11_2564at 842.815 kb on - strand, within Ac3H11_2564at 842.815 kb on - strand, within Ac3H11_2564at 842.910 kb on + strand, within Ac3H11_2564at 843.090 kb on + strand, within Ac3H11_2564at 843.090 kb on + strand, within Ac3H11_2564at 843.090 kb on + strand, within Ac3H11_2564at 843.091 kb on - strand, within Ac3H11_2564at 843.091 kb on - strand, within Ac3H11_2564at 843.091 kb on - strand, within Ac3H11_2564at 843.324 kb on + strandat 843.324 kb on + strandat 843.324 kb on + strandat 843.325 kb on - strandat 843.325 kb on - strandat 843.325 kb on - strandat 843.325 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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840,318 + Ac3H11_2562 0.36 -0.9
840,319 - Ac3H11_2562 0.36 -0.1
840,378 + Ac3H11_2562 0.42 -0.7
840,379 - Ac3H11_2562 0.42 +0.4
840,379 - Ac3H11_2562 0.42 -1.0
840,387 + Ac3H11_2562 0.43 -0.7
840,387 + Ac3H11_2562 0.43 +0.0
840,387 + Ac3H11_2562 0.43 -2.5
840,387 + Ac3H11_2562 0.43 -1.1
840,388 - Ac3H11_2562 0.43 -1.2
840,388 - Ac3H11_2562 0.43 -3.4
840,388 - Ac3H11_2562 0.43 -0.9
840,388 - Ac3H11_2562 0.43 +0.2
840,388 - Ac3H11_2562 0.43 +1.2
840,388 - Ac3H11_2562 0.43 -0.3
840,388 - Ac3H11_2562 0.43 -0.5
840,513 + Ac3H11_2562 0.56 +0.1
840,513 + Ac3H11_2562 0.56 -1.9
840,513 + Ac3H11_2562 0.56 +0.5
840,513 + Ac3H11_2562 0.56 +1.1
840,514 - Ac3H11_2562 0.56 -0.9
840,610 - Ac3H11_2562 0.66 -1.1
840,961 + +0.1
841,017 + -0.9
841,023 + +0.1
841,023 + -0.5
841,023 + +1.3
841,023 + -2.1
841,023 + +0.6
841,024 - +2.5
841,024 - +3.3
841,024 - +1.6
841,024 - +1.2
841,024 - +0.2
841,024 - +2.4
841,024 - +2.5
841,024 - +1.2
841,024 - +3.4
841,024 - +1.9
841,025 + -2.2
841,025 + +0.7
841,025 + -1.1
841,025 + +0.2
841,025 + -0.1
841,025 + -3.3
841,025 + +0.9
841,025 + +1.7
841,026 - +0.6
841,026 - +1.5
841,026 - +0.4
841,027 + +0.9
841,027 + -2.4
841,027 + +2.1
841,027 + +1.3
841,027 + +1.4
841,028 - +2.1
841,034 + +0.0
841,034 + -0.8
841,074 + -1.5
841,074 + -0.9
841,075 - -2.1
841,075 - -3.2
841,127 + +1.3
841,127 + +0.5
841,127 + -0.7
841,127 + -0.5
841,128 - -1.2
841,210 - -0.3
841,287 - -0.1
841,408 + -0.1
841,409 - +2.3
841,409 - +0.3
841,462 + Ac3H11_2563 0.11 -0.1
842,009 + Ac3H11_2563 0.50 +0.5
842,009 + Ac3H11_2563 0.50 +0.5
842,010 - Ac3H11_2563 0.50 -1.4
842,149 + Ac3H11_2563 0.60 +0.5
842,149 + Ac3H11_2563 0.60 +1.3
842,149 + Ac3H11_2563 0.60 +0.1
842,149 + Ac3H11_2563 0.60 +1.0
842,149 + Ac3H11_2563 0.60 +3.0
842,149 + Ac3H11_2563 0.60 +2.2
842,149 + Ac3H11_2563 0.60 +0.5
842,149 + Ac3H11_2563 0.60 -0.6
842,149 + Ac3H11_2563 0.60 +0.9
842,149 + Ac3H11_2563 0.60 -1.5
842,149 + Ac3H11_2563 0.60 -0.4
842,150 - Ac3H11_2563 0.60 -0.2
842,150 - Ac3H11_2563 0.60 +0.5
842,150 - Ac3H11_2563 0.60 +0.0
842,150 - Ac3H11_2563 0.60 +0.9
842,150 - Ac3H11_2563 0.60 -2.2
842,150 - Ac3H11_2563 0.60 +2.1
842,150 - Ac3H11_2563 0.60 -1.9
842,150 - Ac3H11_2563 0.60 +0.5
842,150 - Ac3H11_2563 0.60 +1.5
842,150 - Ac3H11_2563 0.60 +0.5
842,150 - Ac3H11_2563 0.60 +0.1
842,150 - Ac3H11_2563 0.60 -1.2
842,155 + Ac3H11_2563 0.61 -0.9
842,155 + Ac3H11_2563 0.61 +1.5
842,155 + Ac3H11_2563 0.61 -2.2
842,155 + Ac3H11_2563 0.61 +1.2
842,156 - Ac3H11_2563 0.61 +1.3
842,156 - Ac3H11_2563 0.61 -1.2
842,176 - Ac3H11_2563 0.62 +0.7
842,485 + Ac3H11_2563 0.85 -0.5
842,485 + Ac3H11_2563 0.85 +1.8
842,485 + Ac3H11_2563 0.85 -0.4
842,485 + Ac3H11_2563 0.85 -0.3
842,485 + Ac3H11_2563 0.85 +2.1
842,485 + Ac3H11_2563 0.85 +0.4
842,485 + Ac3H11_2563 0.85 -0.5
842,486 - Ac3H11_2563 0.85 -3.8
842,486 - Ac3H11_2563 0.85 +1.1
842,486 - Ac3H11_2563 0.85 +1.3
842,486 - Ac3H11_2563 0.85 -2.4
842,486 - Ac3H11_2563 0.85 -1.3
842,486 - Ac3H11_2563 0.85 +0.8
842,486 - Ac3H11_2563 0.85 +0.9
842,486 - Ac3H11_2563 0.85 -2.7
842,486 - Ac3H11_2563 0.85 -0.0
842,486 - Ac3H11_2563 0.85 +2.8
842,727 + +1.1
842,814 + Ac3H11_2564 0.17 -2.8
842,814 + Ac3H11_2564 0.17 -0.6
842,814 + Ac3H11_2564 0.17 -2.5
842,814 + Ac3H11_2564 0.17 -0.6
842,814 + Ac3H11_2564 0.17 +1.2
842,815 - Ac3H11_2564 0.17 +1.5
842,815 - Ac3H11_2564 0.17 -0.5
842,815 - Ac3H11_2564 0.17 +3.6
842,815 - Ac3H11_2564 0.17 +0.7
842,910 + Ac3H11_2564 0.31 +1.0
843,090 + Ac3H11_2564 0.57 -3.4
843,090 + Ac3H11_2564 0.57 +3.3
843,090 + Ac3H11_2564 0.57 -0.5
843,091 - Ac3H11_2564 0.57 +2.3
843,091 - Ac3H11_2564 0.57 +0.1
843,091 - Ac3H11_2564 0.57 +1.0
843,324 + -0.5
843,324 + +1.5
843,324 + +0.8
843,325 - +0.3
843,325 - +1.3
843,325 - +1.7
843,325 - +0.6

Or see this region's nucleotide sequence