Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_252

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_251 and Ac3H11_252 are separated by 202 nucleotidesAc3H11_252 and Ac3H11_253 are separated by 140 nucleotidesAc3H11_253 and Ac3H11_254 overlap by 4 nucleotides Ac3H11_251 - hypothetical protein, at 70,307 to 70,648 _251 Ac3H11_252 - hypothetical protein, at 70,851 to 71,588 _252 Ac3H11_253 - GCN5-related N-acetyltransferase, at 71,729 to 72,421 _253 Ac3H11_254 - probable transcriptional regulator protein, MarR family, at 72,418 to 72,975 _254 Position (kb) 70 71 72Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 69.881 kb on + strandat 69.881 kb on + strandat 69.881 kb on + strandat 69.881 kb on + strandat 69.881 kb on + strandat 69.881 kb on + strandat 69.882 kb on - strandat 69.882 kb on - strandat 69.882 kb on - strandat 69.882 kb on - strandat 69.882 kb on - strandat 69.882 kb on - strandat 69.983 kb on + strandat 69.984 kb on - strandat 69.984 kb on - strandat 69.984 kb on - strandat 70.140 kb on + strandat 70.140 kb on + strandat 70.167 kb on + strandat 70.308 kb on + strandat 70.596 kb on + strand, within Ac3H11_251at 70.635 kb on + strandat 70.635 kb on + strandat 70.635 kb on + strandat 70.636 kb on - strandat 70.697 kb on + strandat 70.698 kb on - strandat 70.713 kb on + strandat 70.839 kb on + strandat 70.839 kb on + strandat 70.839 kb on + strandat 70.840 kb on - strandat 70.840 kb on - strandat 70.840 kb on - strandat 70.840 kb on - strandat 70.840 kb on - strandat 71.008 kb on + strand, within Ac3H11_252at 71.008 kb on + strand, within Ac3H11_252at 71.008 kb on + strand, within Ac3H11_252at 71.008 kb on + strand, within Ac3H11_252at 71.008 kb on + strand, within Ac3H11_252at 71.008 kb on + strand, within Ac3H11_252at 71.009 kb on - strand, within Ac3H11_252at 71.009 kb on - strand, within Ac3H11_252at 71.009 kb on - strand, within Ac3H11_252at 71.009 kb on - strand, within Ac3H11_252at 71.009 kb on - strand, within Ac3H11_252at 71.009 kb on - strand, within Ac3H11_252at 71.009 kb on - strand, within Ac3H11_252at 71.009 kb on - strand, within Ac3H11_252at 71.009 kb on - strand, within Ac3H11_252at 71.014 kb on + strand, within Ac3H11_252at 71.014 kb on + strand, within Ac3H11_252at 71.014 kb on + strand, within Ac3H11_252at 71.014 kb on + strand, within Ac3H11_252at 71.014 kb on + strand, within Ac3H11_252at 71.014 kb on + strand, within Ac3H11_252at 71.015 kb on - strand, within Ac3H11_252at 71.015 kb on - strand, within Ac3H11_252at 71.015 kb on - strand, within Ac3H11_252at 71.015 kb on - strand, within Ac3H11_252at 71.015 kb on - strand, within Ac3H11_252at 71.015 kb on - strand, within Ac3H11_252at 71.015 kb on - strand, within Ac3H11_252at 71.015 kb on - strand, within Ac3H11_252at 71.022 kb on + strand, within Ac3H11_252at 71.063 kb on - strand, within Ac3H11_252at 71.212 kb on + strand, within Ac3H11_252at 71.212 kb on + strand, within Ac3H11_252at 71.212 kb on + strand, within Ac3H11_252at 71.212 kb on + strand, within Ac3H11_252at 71.213 kb on - strand, within Ac3H11_252at 71.213 kb on - strand, within Ac3H11_252at 71.213 kb on - strand, within Ac3H11_252at 71.213 kb on - strand, within Ac3H11_252at 71.213 kb on - strand, within Ac3H11_252at 71.299 kb on + strand, within Ac3H11_252at 71.299 kb on + strand, within Ac3H11_252at 71.299 kb on + strand, within Ac3H11_252at 71.299 kb on + strand, within Ac3H11_252at 71.300 kb on - strand, within Ac3H11_252at 71.404 kb on + strand, within Ac3H11_252at 71.405 kb on - strand, within Ac3H11_252at 71.787 kb on + strandat 71.787 kb on + strandat 71.787 kb on + strandat 71.788 kb on - strandat 71.788 kb on - strandat 71.788 kb on - strandat 71.788 kb on - strandat 71.788 kb on - strandat 71.788 kb on - strandat 71.788 kb on - strandat 71.788 kb on - strandat 72.363 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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69,881 + +0.7
69,881 + +2.0
69,881 + +1.8
69,881 + -2.3
69,881 + +1.6
69,881 + -2.1
69,882 - +1.6
69,882 - +1.2
69,882 - -0.5
69,882 - +1.1
69,882 - -0.6
69,882 - -3.2
69,983 + -1.0
69,984 - +2.1
69,984 - -0.9
69,984 - -0.2
70,140 + -0.6
70,140 + -2.9
70,167 + +1.8
70,308 + -0.8
70,596 + Ac3H11_251 0.85 +2.8
70,635 + -2.0
70,635 + +1.0
70,635 + +0.2
70,636 - +0.3
70,697 + +1.1
70,698 - -1.4
70,713 + -0.0
70,839 + +1.4
70,839 + +0.9
70,839 + +2.0
70,840 - +0.2
70,840 - -0.8
70,840 - -0.0
70,840 - +1.6
70,840 - -0.2
71,008 + Ac3H11_252 0.21 -0.2
71,008 + Ac3H11_252 0.21 +0.3
71,008 + Ac3H11_252 0.21 +0.9
71,008 + Ac3H11_252 0.21 -0.6
71,008 + Ac3H11_252 0.21 +2.1
71,008 + Ac3H11_252 0.21 +0.3
71,009 - Ac3H11_252 0.21 +0.6
71,009 - Ac3H11_252 0.21 -0.0
71,009 - Ac3H11_252 0.21 -0.8
71,009 - Ac3H11_252 0.21 -0.8
71,009 - Ac3H11_252 0.21 -3.1
71,009 - Ac3H11_252 0.21 -2.6
71,009 - Ac3H11_252 0.21 -0.6
71,009 - Ac3H11_252 0.21 -1.6
71,009 - Ac3H11_252 0.21 +0.9
71,014 + Ac3H11_252 0.22 +0.5
71,014 + Ac3H11_252 0.22 +0.5
71,014 + Ac3H11_252 0.22 +3.5
71,014 + Ac3H11_252 0.22 -3.3
71,014 + Ac3H11_252 0.22 -3.0
71,014 + Ac3H11_252 0.22 -2.6
71,015 - Ac3H11_252 0.22 -1.0
71,015 - Ac3H11_252 0.22 -0.4
71,015 - Ac3H11_252 0.22 -1.2
71,015 - Ac3H11_252 0.22 -0.1
71,015 - Ac3H11_252 0.22 -0.1
71,015 - Ac3H11_252 0.22 +0.1
71,015 - Ac3H11_252 0.22 -2.8
71,015 - Ac3H11_252 0.22 +0.4
71,022 + Ac3H11_252 0.23 -3.6
71,063 - Ac3H11_252 0.29 +2.4
71,212 + Ac3H11_252 0.49 +1.8
71,212 + Ac3H11_252 0.49 -0.0
71,212 + Ac3H11_252 0.49 +0.5
71,212 + Ac3H11_252 0.49 -1.4
71,213 - Ac3H11_252 0.49 +1.8
71,213 - Ac3H11_252 0.49 +0.5
71,213 - Ac3H11_252 0.49 -0.3
71,213 - Ac3H11_252 0.49 -0.2
71,213 - Ac3H11_252 0.49 +0.6
71,299 + Ac3H11_252 0.61 +0.3
71,299 + Ac3H11_252 0.61 -1.4
71,299 + Ac3H11_252 0.61 -1.1
71,299 + Ac3H11_252 0.61 -2.0
71,300 - Ac3H11_252 0.61 -2.0
71,404 + Ac3H11_252 0.75 -0.4
71,405 - Ac3H11_252 0.75 -0.5
71,787 + -0.4
71,787 + -1.4
71,787 + -2.5
71,788 - +0.2
71,788 - -2.1
71,788 - -0.5
71,788 - -1.6
71,788 - -2.4
71,788 - -0.2
71,788 - +1.6
71,788 - -0.4
72,363 + -1.0

Or see this region's nucleotide sequence